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Cluster: HRGMv2_2071_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2071_24 HRGMv2_2071_24_9 12357 13379 + GT2
pfam HRGMv2_2071_24 HRGMv2_2071_24_10 13351 13758 + NusG_II
TC HRGMv2_2071_24 HRGMv2_2071_24_11 14085 15398 + 3.D.6.1.2
TC HRGMv2_2071_24 HRGMv2_2071_24_12 15419 16372 + 3.D.6.1.2
TC HRGMv2_2071_24 HRGMv2_2071_24_13 16372 17001 + 3.D.6.1.2
TC HRGMv2_2071_24 HRGMv2_2071_24_14 17003 17773 + 3.D.6.1.2
TC HRGMv2_2071_24 HRGMv2_2071_24_15 17788 18363 + 3.D.6.1.2
TC HRGMv2_2071_24 HRGMv2_2071_24_16 18379 19170 + 3.D.6.1.2
Gene ID: HRGMv2_2071_24_9
Type: CAZyme
Location: 12357 - 13379 (+)
Gene ID: HRGMv2_2071_24_10
Type: pfam
Location: 13351 - 13758 (+)
Gene ID: HRGMv2_2071_24_11
Type: TC
Location: 14085 - 15398 (+)
Gene ID: HRGMv2_2071_24_12
Type: TC
Location: 15419 - 16372 (+)
Gene ID: HRGMv2_2071_24_13
Type: TC
Location: 16372 - 17001 (+)
Gene ID: HRGMv2_2071_24_14
Type: TC
Location: 17003 - 17773 (+)
Gene ID: HRGMv2_2071_24_15
Type: TC
Location: 17788 - 18363 (+)
Gene ID: HRGMv2_2071_24_16
Type: TC
Location: 18379 - 19170 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Anaerobutyricum
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2071_24_10 vegan > omnivore 1.69148 0.02248
HRGMv2_2071_24_13 vegan > omnivore 1.32837 0.02248

🧭 Explore Read Mapping of CGC

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