Cluster: HRGMv2_2055_CGC60
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2055
- CGC Family ID: CGCFAM_00347
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2055_60 | HRGMv2_2055_60_28 | 38254 | 39840 | - | GH28 |
| TC | HRGMv2_2055_60 | HRGMv2_2055_60_29 | 39908 | 40774 | - | 3.A.1.1.39 |
| TC | HRGMv2_2055_60 | HRGMv2_2055_60_30 | 40791 | 41723 | - | 3.A.1.1.11 |
| STP | HRGMv2_2055_60 | HRGMv2_2055_60_31 | 41861 | 43207 | - | SBP_bac_1 |
| TF | HRGMv2_2055_60 | HRGMv2_2055_60_32 | 43550 | 45112 | + | HTH_AraC |
| TC | HRGMv2_2055_60 | HRGMv2_2055_60_33 | 45139 | 46965 | + | 8.A.59.2.1 |
Gene ID: HRGMv2_2055_60_28
Type: CAZyme
Location: 38254 - 39840 (-)
Type: CAZyme
Location: 38254 - 39840 (-)
Gene ID: HRGMv2_2055_60_29
Type: TC
Location: 39908 - 40774 (-)
Type: TC
Location: 39908 - 40774 (-)
Gene ID: HRGMv2_2055_60_30
Type: TC
Location: 40791 - 41723 (-)
Type: TC
Location: 40791 - 41723 (-)
Gene ID: HRGMv2_2055_60_31
Type: STP
Location: 41861 - 43207 (-)
Type: STP
Location: 41861 - 43207 (-)
Gene ID: HRGMv2_2055_60_32
Type: TF
Location: 43550 - 45112 (+)
Type: TF
Location: 43550 - 45112 (+)
Gene ID: HRGMv2_2055_60_33
Type: TC
Location: 45139 - 46965 (+)
Type: TC
Location: 45139 - 46965 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anthropogastromicrobium
Species
Anthropogastromicrobium aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2055_60_29 | vegetarian > omnivore | 1.24871 | 0.01089 |
| HRGMv2_2055_60_32 | vegan > omnivore | 1.23314 | 0.00701 |