Cluster: HRGMv2_2055_CGC58
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: HRGMv2_2055
- CGC Family ID: CGCFAM_00818
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2055_59 | HRGMv2_2055_59_14 | 17889 | 18875 | + | 3.A.1.1.10 |
| TC | HRGMv2_2055_59 | HRGMv2_2055_59_15 | 18891 | 19814 | + | 3.A.1.1.10 |
| STP | HRGMv2_2055_59 | HRGMv2_2055_59_16 | 19881 | 21428 | + | SBP_bac_1 |
| TF | HRGMv2_2055_59 | HRGMv2_2055_59_17 | 21525 | 22532 | + | LacI |
| CAZyme | HRGMv2_2055_59 | HRGMv2_2055_59_18 | 22534 | 24297 | + | GH53 |
| CAZyme | HRGMv2_2055_59 | HRGMv2_2055_59_19 | 24362 | 26515 | + | GH35 |
| CAZyme | HRGMv2_2055_59 | HRGMv2_2055_59_20 | 26615 | 29074 | + | GH2 |
| CAZyme | HRGMv2_2055_59 | HRGMv2_2055_59_21 | 29185 | 31338 | + | GH35 |
| TF | HRGMv2_2055_59 | HRGMv2_2055_59_22 | 31465 | 32349 | + | HTH_AraC | HTH_AraC |
| STP | HRGMv2_2055_59 | HRGMv2_2055_59_23 | 32695 | 34323 | + | SBP_bac_1 |
| TC | HRGMv2_2055_59 | HRGMv2_2055_59_24 | 34479 | 35438 | + | 3.A.1.1.10 |
| TC | HRGMv2_2055_59 | HRGMv2_2055_59_25 | 35458 | 36360 | + | 3.A.1.1.10 |
| TF | HRGMv2_2055_59 | HRGMv2_2055_59_26 | 36466 | 37350 | + | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2055_59 | HRGMv2_2055_59_27 | 37644 | 39215 | + | 3.A.1.1.10 |
| TC | HRGMv2_2055_59 | HRGMv2_2055_59_28 | 39300 | 40229 | + | 3.A.1.1.10 |
| TC | HRGMv2_2055_59 | HRGMv2_2055_59_29 | 40246 | 41136 | + | 3.A.1.1.10 |
| CAZyme | HRGMv2_2055_59 | HRGMv2_2055_59_30 | 41168 | 42949 | + | GH2 |
Gene ID: HRGMv2_2055_59_14
Type: TC
Location: 17889 - 18875 (+)
Type: TC
Location: 17889 - 18875 (+)
Gene ID: HRGMv2_2055_59_15
Type: TC
Location: 18891 - 19814 (+)
Type: TC
Location: 18891 - 19814 (+)
Gene ID: HRGMv2_2055_59_16
Type: STP
Location: 19881 - 21428 (+)
Type: STP
Location: 19881 - 21428 (+)
Gene ID: HRGMv2_2055_59_17
Type: TF
Location: 21525 - 22532 (+)
Type: TF
Location: 21525 - 22532 (+)
Gene ID: HRGMv2_2055_59_18
Type: CAZyme
Location: 22534 - 24297 (+)
Type: CAZyme
Location: 22534 - 24297 (+)
Gene ID: HRGMv2_2055_59_19
Type: CAZyme
Location: 24362 - 26515 (+)
Type: CAZyme
Location: 24362 - 26515 (+)
Gene ID: HRGMv2_2055_59_20
Type: CAZyme
Location: 26615 - 29074 (+)
Type: CAZyme
Location: 26615 - 29074 (+)
Gene ID: HRGMv2_2055_59_21
Type: CAZyme
Location: 29185 - 31338 (+)
Type: CAZyme
Location: 29185 - 31338 (+)
Gene ID: HRGMv2_2055_59_22
Type: TF
Location: 31465 - 32349 (+)
Type: TF
Location: 31465 - 32349 (+)
Gene ID: HRGMv2_2055_59_23
Type: STP
Location: 32695 - 34323 (+)
Type: STP
Location: 32695 - 34323 (+)
Gene ID: HRGMv2_2055_59_24
Type: TC
Location: 34479 - 35438 (+)
Type: TC
Location: 34479 - 35438 (+)
Gene ID: HRGMv2_2055_59_25
Type: TC
Location: 35458 - 36360 (+)
Type: TC
Location: 35458 - 36360 (+)
Gene ID: HRGMv2_2055_59_26
Type: TF
Location: 36466 - 37350 (+)
Type: TF
Location: 36466 - 37350 (+)
Gene ID: HRGMv2_2055_59_27
Type: TC
Location: 37644 - 39215 (+)
Type: TC
Location: 37644 - 39215 (+)
Gene ID: HRGMv2_2055_59_28
Type: TC
Location: 39300 - 40229 (+)
Type: TC
Location: 39300 - 40229 (+)
Gene ID: HRGMv2_2055_59_29
Type: TC
Location: 40246 - 41136 (+)
Type: TC
Location: 40246 - 41136 (+)
Gene ID: HRGMv2_2055_59_30
Type: CAZyme
Location: 41168 - 42949 (+)
Type: CAZyme
Location: 41168 - 42949 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anthropogastromicrobium
Species
Anthropogastromicrobium aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2055_59_15 | vegan > omnivore | 1.89555 | 0.00701 |
| HRGMv2_2055_59_16 | vegan > omnivore | 1.06295 | 0.00701 |
| HRGMv2_2055_59_17 | vegan > omnivore | 1.46699 | 0.00701 |
| HRGMv2_2055_59_18 | vegan > omnivore | 1.26659 | 0.00701 |