Cluster: HRGMv2_2055_CGC54
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_2055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2055_56 | HRGMv2_2055_56_17 | 19924 | 21639 | - | 3.A.1.135.6 |
| pfam | HRGMv2_2055_56 | HRGMv2_2055_56_18 | 21662 | 22717 | - | DUF4097 | HAAS |
| TF | HRGMv2_2055_56 | HRGMv2_2055_56_19 | 22778 | 23098 | - | PadR |
| CAZyme | HRGMv2_2055_56 | HRGMv2_2055_56_20 | 23238 | 24263 | - | GH172 |
| TF | HRGMv2_2055_56 | HRGMv2_2055_56_21 | 24311 | 25906 | - | HTH_AraC | HTH_AraC |
| TC | HRGMv2_2055_56 | HRGMv2_2055_56_22 | 25903 | 27534 | - | 8.A.59.2.1 |
| CAZyme | HRGMv2_2055_56 | HRGMv2_2055_56_23 | 27637 | 29061 | - | GH32 |
| CAZyme | HRGMv2_2055_56 | HRGMv2_2055_56_24 | 29066 | 30499 | - | GH32 |
| TC | HRGMv2_2055_56 | HRGMv2_2055_56_25 | 30622 | 32310 | - | 3.A.1.1.9 |
| TC | HRGMv2_2055_56 | HRGMv2_2055_56_26 | 32375 | 33262 | - | 3.A.1.1.9 |
| TC | HRGMv2_2055_56 | HRGMv2_2055_56_27 | 33282 | 34205 | - | 3.A.1.1.9 |
| NULL(UNKNOWN) | HRGMv2_2055_56 | HRGMv2_2055_56_28 | 34210 | 34371 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2055_56 | HRGMv2_2055_56_29 | 34387 | 35874 | - | GH32 |
Gene ID: HRGMv2_2055_56_17
Type: TC
Location: 19924 - 21639 (-)
Type: TC
Location: 19924 - 21639 (-)
Gene ID: HRGMv2_2055_56_18
Type: pfam
Location: 21662 - 22717 (-)
Type: pfam
Location: 21662 - 22717 (-)
Gene ID: HRGMv2_2055_56_19
Type: TF
Location: 22778 - 23098 (-)
Type: TF
Location: 22778 - 23098 (-)
Gene ID: HRGMv2_2055_56_20
Type: CAZyme
Location: 23238 - 24263 (-)
Type: CAZyme
Location: 23238 - 24263 (-)
Gene ID: HRGMv2_2055_56_21
Type: TF
Location: 24311 - 25906 (-)
Type: TF
Location: 24311 - 25906 (-)
Gene ID: HRGMv2_2055_56_22
Type: TC
Location: 25903 - 27534 (-)
Type: TC
Location: 25903 - 27534 (-)
Gene ID: HRGMv2_2055_56_23
Type: CAZyme
Location: 27637 - 29061 (-)
Type: CAZyme
Location: 27637 - 29061 (-)
Gene ID: HRGMv2_2055_56_24
Type: CAZyme
Location: 29066 - 30499 (-)
Type: CAZyme
Location: 29066 - 30499 (-)
Gene ID: HRGMv2_2055_56_25
Type: TC
Location: 30622 - 32310 (-)
Type: TC
Location: 30622 - 32310 (-)
Gene ID: HRGMv2_2055_56_26
Type: TC
Location: 32375 - 33262 (-)
Type: TC
Location: 32375 - 33262 (-)
Gene ID: HRGMv2_2055_56_27
Type: TC
Location: 33282 - 34205 (-)
Type: TC
Location: 33282 - 34205 (-)
Gene ID: HRGMv2_2055_56_28
Type:
Location: 34210 - 34371 (-)
Type:
Location: 34210 - 34371 (-)
Gene ID: HRGMv2_2055_56_29
Type: CAZyme
Location: 34387 - 35874 (-)
Type: CAZyme
Location: 34387 - 35874 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anthropogastromicrobium
Species
Anthropogastromicrobium aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2055_56_24 | vegan > omnivore | 1.17425 | 0.00701 |
| HRGMv2_2055_56_28 | vegan > omnivore | 1.29537 | 0.00701 |
| HRGMv2_2055_56_29 | vegan > omnivore | 1.17898 | 0.00701 |
| HRGMv2_2055_56_29 | vegetarian > omnivore | 1.53848 | 0.01089 |