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Cluster: HRGMv2_2055_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_50 HRGMv2_2055_50_10 10776 12437 - 3.A.1.1.9
TC HRGMv2_2055_50 HRGMv2_2055_50_11 12453 13325 - 3.A.1.1.27
TC HRGMv2_2055_50 HRGMv2_2055_50_12 13325 14698 - 3.A.1.1.27
STP HRGMv2_2055_50 HRGMv2_2055_50_13 14802 16091 - SBP_bac_1
TC HRGMv2_2055_50 HRGMv2_2055_50_14 16211 17935 - 8.A.59.2.1
TF HRGMv2_2055_50 HRGMv2_2055_50_15 17922 19478 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2055_50 HRGMv2_2055_50_16 19594 21849 - GT35
TF HRGMv2_2055_50 HRGMv2_2055_50_17 22048 22926 + HTH_AraC | HTH_AraC
TC HRGMv2_2055_50 HRGMv2_2055_50_18 23014 24915 - 3.A.1.135.5
TC HRGMv2_2055_50 HRGMv2_2055_50_19 24915 26675 - 3.A.1.135.5
Gene ID: HRGMv2_2055_50_10
Type: TC
Location: 10776 - 12437 (-)
Gene ID: HRGMv2_2055_50_11
Type: TC
Location: 12453 - 13325 (-)
Gene ID: HRGMv2_2055_50_12
Type: TC
Location: 13325 - 14698 (-)
Gene ID: HRGMv2_2055_50_13
Type: STP
Location: 14802 - 16091 (-)
Gene ID: HRGMv2_2055_50_14
Type: TC
Location: 16211 - 17935 (-)
Gene ID: HRGMv2_2055_50_15
Type: TF
Location: 17922 - 19478 (-)
Gene ID: HRGMv2_2055_50_16
Type: CAZyme
Location: 19594 - 21849 (-)
Gene ID: HRGMv2_2055_50_17
Type: TF
Location: 22048 - 22926 (+)
Gene ID: HRGMv2_2055_50_18
Type: TC
Location: 23014 - 24915 (-)
Gene ID: HRGMv2_2055_50_19
Type: TC
Location: 24915 - 26675 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_50_13 vegetarian > omnivore 1.38804 0.01089
HRGMv2_2055_50_17 vegetarian > omnivore 1.07426 0.01089

🧭 Explore Read Mapping of CGC

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