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Cluster: HRGMv2_2055_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_45 HRGMv2_2055_45_9 6442 7851 + 2.A.2.1.1
CAZyme HRGMv2_2055_45 HRGMv2_2055_45_10 7889 10534 + GH3
NULL(UNKNOWN) HRGMv2_2055_45 HRGMv2_2055_45_11 10531 11121 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2055_45 HRGMv2_2055_45_12 11221 13650 + GH3
CAZyme HRGMv2_2055_45 HRGMv2_2055_45_13 13647 16088 + GH148
CAZyme HRGMv2_2055_45 HRGMv2_2055_45_14 16115 18451 + GH94
CAZyme HRGMv2_2055_45 HRGMv2_2055_45_15 18472 20937 + GH3
pfam HRGMv2_2055_45 HRGMv2_2055_45_16 21349 23073 + Cthe_2159 | Cthe_2159
CAZyme HRGMv2_2055_45 HRGMv2_2055_45_17 23266 25380 + GH2
pfam HRGMv2_2055_45 HRGMv2_2055_45_18 25608 26831 + MFS_1
TC HRGMv2_2055_45 HRGMv2_2055_45_19 27160 28716 + 3.A.1.120.6
TC HRGMv2_2055_45 HRGMv2_2055_45_20 28921 29661 + 3.A.1.4.6
Gene ID: HRGMv2_2055_45_9
Type: TC
Location: 6442 - 7851 (+)
Gene ID: HRGMv2_2055_45_10
Type: CAZyme
Location: 7889 - 10534 (+)
Gene ID: HRGMv2_2055_45_11
Type:
Location: 10531 - 11121 (+)
Gene ID: HRGMv2_2055_45_12
Type: CAZyme
Location: 11221 - 13650 (+)
Gene ID: HRGMv2_2055_45_13
Type: CAZyme
Location: 13647 - 16088 (+)
Gene ID: HRGMv2_2055_45_14
Type: CAZyme
Location: 16115 - 18451 (+)
Gene ID: HRGMv2_2055_45_15
Type: CAZyme
Location: 18472 - 20937 (+)
Gene ID: HRGMv2_2055_45_16
Type: pfam
Location: 21349 - 23073 (+)
Gene ID: HRGMv2_2055_45_17
Type: CAZyme
Location: 23266 - 25380 (+)
Gene ID: HRGMv2_2055_45_18
Type: pfam
Location: 25608 - 26831 (+)
Gene ID: HRGMv2_2055_45_19
Type: TC
Location: 27160 - 28716 (+)
Gene ID: HRGMv2_2055_45_20
Type: TC
Location: 28921 - 29661 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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