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Cluster: HRGMv2_2055_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2055_43 HRGMv2_2055_43_1 324 1997 - GH13_31
CAZyme HRGMv2_2055_43 HRGMv2_2055_43_2 2056 4407 - GH31_15
pfam HRGMv2_2055_43 HRGMv2_2055_43_3 4512 6224 - His_kinase
TC HRGMv2_2055_43 HRGMv2_2055_43_4 6327 7934 - 3.A.1.1.9
TC HRGMv2_2055_43 HRGMv2_2055_43_5 8025 8960 - 3.A.1.1.29
TC HRGMv2_2055_43 HRGMv2_2055_43_6 8960 9898 - 3.A.1.1.10
TF HRGMv2_2055_43 HRGMv2_2055_43_7 10110 11708 - HTH_AraC
CAZyme HRGMv2_2055_43 HRGMv2_2055_43_8 11886 14885 - GH2
Gene ID: HRGMv2_2055_43_1
Type: CAZyme
Location: 324 - 1997 (-)
Gene ID: HRGMv2_2055_43_2
Type: CAZyme
Location: 2056 - 4407 (-)
Gene ID: HRGMv2_2055_43_3
Type: pfam
Location: 4512 - 6224 (-)
Gene ID: HRGMv2_2055_43_4
Type: TC
Location: 6327 - 7934 (-)
Gene ID: HRGMv2_2055_43_5
Type: TC
Location: 8025 - 8960 (-)
Gene ID: HRGMv2_2055_43_6
Type: TC
Location: 8960 - 9898 (-)
Gene ID: HRGMv2_2055_43_7
Type: TF
Location: 10110 - 11708 (-)
Gene ID: HRGMv2_2055_43_8
Type: CAZyme
Location: 11886 - 14885 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_43_5 vegan > omnivore 2.03338 0.00701
HRGMv2_2055_43_5 vegetarian > omnivore 1.44787 0.01089
HRGMv2_2055_43_8 vegetarian > omnivore 1.44220 0.01089

🧭 Explore Read Mapping of CGC

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