Cluster: HRGMv2_2055_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2055_4 | HRGMv2_2055_4_3 | 1428 | 2465 | + | 2.A.98.1.4 |
| CAZyme | HRGMv2_2055_4 | HRGMv2_2055_4_4 | 2569 | 4017 | - | GH30_5 |
| TF | HRGMv2_2055_4 | HRGMv2_2055_4_5 | 4169 | 5200 | - | LacI |
| TC | HRGMv2_2055_4 | HRGMv2_2055_4_6 | 5301 | 6134 | - | 3.A.1.1.45 |
| TC | HRGMv2_2055_4 | HRGMv2_2055_4_7 | 6134 | 6973 | - | 3.A.1.1.45 |
Gene ID: HRGMv2_2055_4_3
Type: TC
Location: 1428 - 2465 (+)
Type: TC
Location: 1428 - 2465 (+)
Gene ID: HRGMv2_2055_4_4
Type: CAZyme
Location: 2569 - 4017 (-)
Type: CAZyme
Location: 2569 - 4017 (-)
Gene ID: HRGMv2_2055_4_5
Type: TF
Location: 4169 - 5200 (-)
Type: TF
Location: 4169 - 5200 (-)
Gene ID: HRGMv2_2055_4_6
Type: TC
Location: 5301 - 6134 (-)
Type: TC
Location: 5301 - 6134 (-)
Gene ID: HRGMv2_2055_4_7
Type: TC
Location: 6134 - 6973 (-)
Type: TC
Location: 6134 - 6973 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anthropogastromicrobium
Species
Anthropogastromicrobium aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2055_4_6 | vegan > omnivore | 1.46143 | 0.00701 |
| HRGMv2_2055_4_7 | vegan > omnivore | 1.19375 | 0.00701 |