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Cluster: HRGMv2_2055_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_36 HRGMv2_2055_36_1 44 919 - 3.A.1.135.5
CAZyme HRGMv2_2055_36 HRGMv2_2055_36_2 1018 2562 - GH39
CAZyme HRGMv2_2055_36 HRGMv2_2055_36_3 2555 5161 - GH2
CAZyme HRGMv2_2055_36 HRGMv2_2055_36_4 5158 6714 - CBM91 | GH43_10
CAZyme HRGMv2_2055_36 HRGMv2_2055_36_5 6754 9096 - GH95
CAZyme HRGMv2_2055_36 HRGMv2_2055_36_6 9294 10496 - GH8
NULL(UNKNOWN) HRGMv2_2055_36 HRGMv2_2055_36_7 10457 10582 - NULL(UNKNOWN)
[View Structural Homologs]
TF HRGMv2_2055_36 HRGMv2_2055_36_8 10583 11530 + HTH_AraC
TC HRGMv2_2055_36 HRGMv2_2055_36_9 11574 12509 - 3.A.1.1.29
TC HRGMv2_2055_36 HRGMv2_2055_36_10 12522 13460 - 3.A.1.1.29
TC HRGMv2_2055_36 HRGMv2_2055_36_11 13543 15240 - 3.A.1.1.29
TF HRGMv2_2055_36 HRGMv2_2055_36_12 15414 16943 - HTH_AraC
TC HRGMv2_2055_36 HRGMv2_2055_36_13 16919 18706 - 8.A.59.2.1
Gene ID: HRGMv2_2055_36_1
Type: TC
Location: 44 - 919 (-)
Gene ID: HRGMv2_2055_36_2
Type: CAZyme
Location: 1018 - 2562 (-)
Gene ID: HRGMv2_2055_36_3
Type: CAZyme
Location: 2555 - 5161 (-)
Gene ID: HRGMv2_2055_36_4
Type: CAZyme
Location: 5158 - 6714 (-)
Gene ID: HRGMv2_2055_36_5
Type: CAZyme
Location: 6754 - 9096 (-)
Gene ID: HRGMv2_2055_36_6
Type: CAZyme
Location: 9294 - 10496 (-)
Gene ID: HRGMv2_2055_36_7
Type:
Location: 10457 - 10582 (-)
Gene ID: HRGMv2_2055_36_8
Type: TF
Location: 10583 - 11530 (+)
Gene ID: HRGMv2_2055_36_9
Type: TC
Location: 11574 - 12509 (-)
Gene ID: HRGMv2_2055_36_10
Type: TC
Location: 12522 - 13460 (-)
Gene ID: HRGMv2_2055_36_11
Type: TC
Location: 13543 - 15240 (-)
Gene ID: HRGMv2_2055_36_12
Type: TF
Location: 15414 - 16943 (-)
Gene ID: HRGMv2_2055_36_13
Type: TC
Location: 16919 - 18706 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_36_4 vegetarian > omnivore 1.63652 0.01089

🧭 Explore Read Mapping of CGC

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