Cluster: HRGMv2_2055_CGC25
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2055
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2055_22 | HRGMv2_2055_22_43 | 52507 | 53457 | + | 3.A.1.5.19 |
| TC | HRGMv2_2055_22 | HRGMv2_2055_22_44 | 53459 | 55003 | + | 3.A.1.5.19 |
| TC | HRGMv2_2055_22 | HRGMv2_2055_22_45 | 55010 | 57160 | + | 3.A.1.5.19 |
| TC | HRGMv2_2055_22 | HRGMv2_2055_22_46 | 57153 | 58247 | + | 3.A.1.5.19 |
| pfam | HRGMv2_2055_22 | HRGMv2_2055_22_47 | 58248 | 58661 | + | DUF3899 |
| TC | HRGMv2_2055_22 | HRGMv2_2055_22_48 | 58817 | 59494 | + | 3.A.1.3.14 |
| TC | HRGMv2_2055_22 | HRGMv2_2055_22_49 | 59498 | 60232 | + | 3.A.1.3.13 |
| TC | HRGMv2_2055_22 | HRGMv2_2055_22_50 | 60312 | 61319 | + | 3.A.1.3.14 |
| pfam | HRGMv2_2055_22 | HRGMv2_2055_22_51 | 61772 | 63004 | + | tRNA-synt_1b | S4 | SYY_C-terminal |
| CAZyme | HRGMv2_2055_22 | HRGMv2_2055_22_52 | 63209 | 64426 | + | CE12 |
| STP | HRGMv2_2055_22 | HRGMv2_2055_22_53 | 64479 | 66440 | + | GGDEF | Peripla_BP_3 |
| CAZyme | HRGMv2_2055_22 | HRGMv2_2055_22_54 | 66461 | 67918 | + | GH29 |
Gene ID: HRGMv2_2055_22_43
Type: TC
Location: 52507 - 53457 (+)
Type: TC
Location: 52507 - 53457 (+)
Gene ID: HRGMv2_2055_22_44
Type: TC
Location: 53459 - 55003 (+)
Type: TC
Location: 53459 - 55003 (+)
Gene ID: HRGMv2_2055_22_45
Type: TC
Location: 55010 - 57160 (+)
Type: TC
Location: 55010 - 57160 (+)
Gene ID: HRGMv2_2055_22_46
Type: TC
Location: 57153 - 58247 (+)
Type: TC
Location: 57153 - 58247 (+)
Gene ID: HRGMv2_2055_22_47
Type: pfam
Location: 58248 - 58661 (+)
Type: pfam
Location: 58248 - 58661 (+)
Gene ID: HRGMv2_2055_22_48
Type: TC
Location: 58817 - 59494 (+)
Type: TC
Location: 58817 - 59494 (+)
Gene ID: HRGMv2_2055_22_49
Type: TC
Location: 59498 - 60232 (+)
Type: TC
Location: 59498 - 60232 (+)
Gene ID: HRGMv2_2055_22_50
Type: TC
Location: 60312 - 61319 (+)
Type: TC
Location: 60312 - 61319 (+)
Gene ID: HRGMv2_2055_22_51
Type: pfam
Location: 61772 - 63004 (+)
Type: pfam
Location: 61772 - 63004 (+)
Gene ID: HRGMv2_2055_22_52
Type: CAZyme
Location: 63209 - 64426 (+)
Type: CAZyme
Location: 63209 - 64426 (+)
Gene ID: HRGMv2_2055_22_53
Type: STP
Location: 64479 - 66440 (+)
Type: STP
Location: 64479 - 66440 (+)
Gene ID: HRGMv2_2055_22_54
Type: CAZyme
Location: 66461 - 67918 (+)
Type: CAZyme
Location: 66461 - 67918 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anthropogastromicrobium
Species
Anthropogastromicrobium aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2055_22_43 | vegetarian > omnivore | 1.19731 | 0.01089 |
| HRGMv2_2055_22_48 | vegan > omnivore | 1.29330 | 0.00701 |
| HRGMv2_2055_22_48 | vegetarian > omnivore | 1.06582 | 0.01089 |