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Cluster: HRGMv2_2055_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_22 HRGMv2_2055_22_23 25059 26009 + 3.A.1.1.45
TC HRGMv2_2055_22 HRGMv2_2055_22_24 26009 26869 + 3.A.1.1.45
CAZyme HRGMv2_2055_22 HRGMv2_2055_22_25 26984 28816 + GH13_4
TC HRGMv2_2055_22 HRGMv2_2055_22_26 28871 30391 - 2.A.118.1.8
peptidase HRGMv2_2055_22 HRGMv2_2055_22_27 30522 31667 - M38.UPW
TF HRGMv2_2055_22 HRGMv2_2055_22_28 31834 32286 + MarR
TC HRGMv2_2055_22 HRGMv2_2055_22_29 32324 34111 - 1.A.11.2.7
Gene ID: HRGMv2_2055_22_23
Type: TC
Location: 25059 - 26009 (+)
Gene ID: HRGMv2_2055_22_24
Type: TC
Location: 26009 - 26869 (+)
Gene ID: HRGMv2_2055_22_25
Type: CAZyme
Location: 26984 - 28816 (+)
Gene ID: HRGMv2_2055_22_26
Type: TC
Location: 28871 - 30391 (-)
Gene ID: HRGMv2_2055_22_27
Type: peptidase
Location: 30522 - 31667 (-)
Gene ID: HRGMv2_2055_22_28
Type: TF
Location: 31834 - 32286 (+)
Gene ID: HRGMv2_2055_22_29
Type: TC
Location: 32324 - 34111 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_22_28 vegan > omnivore 1.45813 0.00701
HRGMv2_2055_22_28 vegetarian > omnivore 1.25560 0.01089

🧭 Explore Read Mapping of CGC

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