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Cluster: HRGMv2_2055_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_20 HRGMv2_2055_20_58 58937 59863 + 3.A.1.1.10
TC HRGMv2_2055_20 HRGMv2_2055_20_59 59879 60808 + 3.A.1.1.29
CAZyme HRGMv2_2055_20 HRGMv2_2055_20_60 60857 62164 + GH29
pfam HRGMv2_2055_20 HRGMv2_2055_20_61 62197 64779 + Transglut_core
TC HRGMv2_2055_20 HRGMv2_2055_20_62 64909 66264 + 2.A.45.2.2
TC HRGMv2_2055_20 HRGMv2_2055_20_63 66344 66946 + 2.A.115.2.14
TC HRGMv2_2055_20 HRGMv2_2055_20_64 67302 68639 + 8.A.59.4.2
CAZyme HRGMv2_2055_20 HRGMv2_2055_20_65 68632 69561 - CE8
Gene ID: HRGMv2_2055_20_58
Type: TC
Location: 58937 - 59863 (+)
Gene ID: HRGMv2_2055_20_59
Type: TC
Location: 59879 - 60808 (+)
Gene ID: HRGMv2_2055_20_60
Type: CAZyme
Location: 60857 - 62164 (+)
Gene ID: HRGMv2_2055_20_61
Type: pfam
Location: 62197 - 64779 (+)
Gene ID: HRGMv2_2055_20_62
Type: TC
Location: 64909 - 66264 (+)
Gene ID: HRGMv2_2055_20_63
Type: TC
Location: 66344 - 66946 (+)
Gene ID: HRGMv2_2055_20_64
Type: TC
Location: 67302 - 68639 (+)
Gene ID: HRGMv2_2055_20_65
Type: CAZyme
Location: 68632 - 69561 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_20_59 vegan > omnivore 1.14946 0.00701
HRGMv2_2055_20_65 vegetarian > omnivore 1.39799 0.01089

🧭 Explore Read Mapping of CGC

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