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Cluster: HRGMv2_2055_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2055_20 HRGMv2_2055_20_27 23208 24392 + GH88
CAZyme HRGMv2_2055_20 HRGMv2_2055_20_28 24412 26448 + GH154
pfam HRGMv2_2055_20 HRGMv2_2055_20_29 26544 27425 + FAA_hydrolase
TC HRGMv2_2055_20 HRGMv2_2055_20_30 27468 28823 + 2.A.66.1.25
TC HRGMv2_2055_20 HRGMv2_2055_20_31 29137 30534 + 1.A.26.1.1
NULL(UNKNOWN) HRGMv2_2055_20 HRGMv2_2055_20_32 30580 30798 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2055_20 HRGMv2_2055_20_33 30872 32005 - GH27
Gene ID: HRGMv2_2055_20_27
Type: CAZyme
Location: 23208 - 24392 (+)
Gene ID: HRGMv2_2055_20_28
Type: CAZyme
Location: 24412 - 26448 (+)
Gene ID: HRGMv2_2055_20_29
Type: pfam
Location: 26544 - 27425 (+)
Gene ID: HRGMv2_2055_20_30
Type: TC
Location: 27468 - 28823 (+)
Gene ID: HRGMv2_2055_20_31
Type: TC
Location: 29137 - 30534 (+)
Gene ID: HRGMv2_2055_20_32
Type:
Location: 30580 - 30798 (-)
Gene ID: HRGMv2_2055_20_33
Type: CAZyme
Location: 30872 - 32005 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_20_30 vegetarian > omnivore 1.05104 0.00683

🧭 Explore Read Mapping of CGC

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