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Cluster: HRGMv2_2055_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_15 HRGMv2_2055_15_45 68064 68948 - 3.A.1.1.29
TC HRGMv2_2055_15 HRGMv2_2055_15_46 68965 69918 - 3.A.1.1.29
TC HRGMv2_2055_15 HRGMv2_2055_15_47 70244 71959 + 9.B.33.1.1
TF HRGMv2_2055_15 HRGMv2_2055_15_48 72014 73465 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_49 73540 75960 - GH31_4
peptidase HRGMv2_2055_15 HRGMv2_2055_15_50 76247 77746 - S09.UPW
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_51 77803 79200 - GH43_35
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_52 79222 80724 - GH51_1
STP HRGMv2_2055_15 HRGMv2_2055_15_53 80881 82584 - SBP_bac_1
TC HRGMv2_2055_15 HRGMv2_2055_15_54 82670 83602 - 3.A.1.1.29
TC HRGMv2_2055_15 HRGMv2_2055_15_55 83625 84533 - 3.A.1.1.29
TF HRGMv2_2055_15 HRGMv2_2055_15_56 84863 85924 - LacI
TC HRGMv2_2055_15 HRGMv2_2055_15_57 85990 87384 - 2.A.66.1.32
Gene ID: HRGMv2_2055_15_45
Type: TC
Location: 68064 - 68948 (-)
Gene ID: HRGMv2_2055_15_46
Type: TC
Location: 68965 - 69918 (-)
Gene ID: HRGMv2_2055_15_47
Type: TC
Location: 70244 - 71959 (+)
Gene ID: HRGMv2_2055_15_48
Type: TF
Location: 72014 - 73465 (+)
Gene ID: HRGMv2_2055_15_49
Type: CAZyme
Location: 73540 - 75960 (-)
Gene ID: HRGMv2_2055_15_50
Type: peptidase
Location: 76247 - 77746 (-)
Gene ID: HRGMv2_2055_15_51
Type: CAZyme
Location: 77803 - 79200 (-)
Gene ID: HRGMv2_2055_15_52
Type: CAZyme
Location: 79222 - 80724 (-)
Gene ID: HRGMv2_2055_15_53
Type: STP
Location: 80881 - 82584 (-)
Gene ID: HRGMv2_2055_15_54
Type: TC
Location: 82670 - 83602 (-)
Gene ID: HRGMv2_2055_15_55
Type: TC
Location: 83625 - 84533 (-)
Gene ID: HRGMv2_2055_15_56
Type: TF
Location: 84863 - 85924 (-)
Gene ID: HRGMv2_2055_15_57
Type: TC
Location: 85990 - 87384 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_15_57 vegan > omnivore 1.07825 0.00701

🧭 Explore Read Mapping of CGC

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