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Cluster: HRGMv2_2055_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_15 HRGMv2_2055_15_20 35108 36040 - 3.A.1.1.29
TC HRGMv2_2055_15 HRGMv2_2055_15_21 36059 37027 - 3.A.1.1.9
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_22 37190 39379 - GH31_14
pfam HRGMv2_2055_15 HRGMv2_2055_15_23 39388 40263 - CN_hydrolase
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_24 40330 41547 - GH88
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_25 41692 42606 - GH43_24
pfam HRGMv2_2055_15 HRGMv2_2055_15_26 42649 44199 - DUF3502
TC HRGMv2_2055_15 HRGMv2_2055_15_27 44196 45944 - 8.A.59.2.1
TF HRGMv2_2055_15 HRGMv2_2055_15_28 45941 47452 - HTH_AraC
STP HRGMv2_2055_15 HRGMv2_2055_15_29 47579 49192 - SBP_bac_1
TC HRGMv2_2055_15 HRGMv2_2055_15_30 49216 50115 - 3.A.1.1.29
TC HRGMv2_2055_15 HRGMv2_2055_15_31 50136 51083 - 3.A.1.1.29
TC HRGMv2_2055_15 HRGMv2_2055_15_32 51313 51945 + 9.B.28.1.8
TC HRGMv2_2055_15 HRGMv2_2055_15_33 52067 54439 - 9.A.8.1.6
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_34 54551 56509 - GH120
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_35 56690 59137 + GH51_2
Gene ID: HRGMv2_2055_15_20
Type: TC
Location: 35108 - 36040 (-)
Gene ID: HRGMv2_2055_15_21
Type: TC
Location: 36059 - 37027 (-)
Gene ID: HRGMv2_2055_15_22
Type: CAZyme
Location: 37190 - 39379 (-)
Gene ID: HRGMv2_2055_15_23
Type: pfam
Location: 39388 - 40263 (-)
Gene ID: HRGMv2_2055_15_24
Type: CAZyme
Location: 40330 - 41547 (-)
Gene ID: HRGMv2_2055_15_25
Type: CAZyme
Location: 41692 - 42606 (-)
Gene ID: HRGMv2_2055_15_26
Type: pfam
Location: 42649 - 44199 (-)
Gene ID: HRGMv2_2055_15_27
Type: TC
Location: 44196 - 45944 (-)
Gene ID: HRGMv2_2055_15_28
Type: TF
Location: 45941 - 47452 (-)
Gene ID: HRGMv2_2055_15_29
Type: STP
Location: 47579 - 49192 (-)
Gene ID: HRGMv2_2055_15_30
Type: TC
Location: 49216 - 50115 (-)
Gene ID: HRGMv2_2055_15_31
Type: TC
Location: 50136 - 51083 (-)
Gene ID: HRGMv2_2055_15_32
Type: TC
Location: 51313 - 51945 (+)
Gene ID: HRGMv2_2055_15_33
Type: TC
Location: 52067 - 54439 (-)
Gene ID: HRGMv2_2055_15_34
Type: CAZyme
Location: 54551 - 56509 (-)
Gene ID: HRGMv2_2055_15_35
Type: CAZyme
Location: 56690 - 59137 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_15_21 vegan > omnivore 1.80884 0.00701
HRGMv2_2055_15_21 vegetarian > omnivore 2.50081 0.01004
HRGMv2_2055_15_24 vegan > omnivore 1.35729 0.00701

🧭 Explore Read Mapping of CGC

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