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Cluster: HRGMv2_2055_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2055_15 HRGMv2_2055_15_3 4146 6020 - 9.B.34.1.2
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_4 6234 7721 + CE4
TC HRGMv2_2055_15 HRGMv2_2055_15_5 7946 8617 + 9.B.28.1.2
pfam HRGMv2_2055_15 HRGMv2_2055_15_6 8670 11645 - Hepar_II_III_C
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_7 11683 13278 - GH39
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_8 13456 16548 - GH2
pfam HRGMv2_2055_15 HRGMv2_2055_15_9 16545 18098 - DUF3502
TC HRGMv2_2055_15 HRGMv2_2055_15_10 18095 19831 - 8.A.59.2.1
TF HRGMv2_2055_15 HRGMv2_2055_15_11 19839 21368 - HTH_AraC | HTH_AraC
TC HRGMv2_2055_15 HRGMv2_2055_15_12 21459 22349 - 3.A.1.1.29
TC HRGMv2_2055_15 HRGMv2_2055_15_13 22365 23321 - 3.A.1.1.10
STP HRGMv2_2055_15 HRGMv2_2055_15_14 23391 24956 - SBP_bac_1
CAZyme HRGMv2_2055_15 HRGMv2_2055_15_15 25069 26493 - GH29
Gene ID: HRGMv2_2055_15_3
Type: TC
Location: 4146 - 6020 (-)
Gene ID: HRGMv2_2055_15_4
Type: CAZyme
Location: 6234 - 7721 (+)
Gene ID: HRGMv2_2055_15_5
Type: TC
Location: 7946 - 8617 (+)
Gene ID: HRGMv2_2055_15_6
Type: pfam
Location: 8670 - 11645 (-)
Gene ID: HRGMv2_2055_15_7
Type: CAZyme
Location: 11683 - 13278 (-)
Gene ID: HRGMv2_2055_15_8
Type: CAZyme
Location: 13456 - 16548 (-)
Gene ID: HRGMv2_2055_15_9
Type: pfam
Location: 16545 - 18098 (-)
Gene ID: HRGMv2_2055_15_10
Type: TC
Location: 18095 - 19831 (-)
Gene ID: HRGMv2_2055_15_11
Type: TF
Location: 19839 - 21368 (-)
Gene ID: HRGMv2_2055_15_12
Type: TC
Location: 21459 - 22349 (-)
Gene ID: HRGMv2_2055_15_13
Type: TC
Location: 22365 - 23321 (-)
Gene ID: HRGMv2_2055_15_14
Type: STP
Location: 23391 - 24956 (-)
Gene ID: HRGMv2_2055_15_15
Type: CAZyme
Location: 25069 - 26493 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2055_15_5 vegan > omnivore 4.25550 0.00701
HRGMv2_2055_15_5 vegetarian > omnivore 3.79028 0.01089

🧭 Explore Read Mapping of CGC

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