Cluster: HRGMv2_2055_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2055
- CGC Family ID: CGCFAM_00408
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2055_12 | HRGMv2_2055_12_17 | 21636 | 22541 | + | 3.A.1.1.11 |
| TC | HRGMv2_2055_12 | HRGMv2_2055_12_18 | 22563 | 23447 | + | 3.A.1.1.34 |
| CAZyme | HRGMv2_2055_12 | HRGMv2_2055_12_19 | 23486 | 25390 | + | GH43_27 |
Gene ID: HRGMv2_2055_12_17
Type: TC
Location: 21636 - 22541 (+)
Type: TC
Location: 21636 - 22541 (+)
Gene ID: HRGMv2_2055_12_18
Type: TC
Location: 22563 - 23447 (+)
Type: TC
Location: 22563 - 23447 (+)
Gene ID: HRGMv2_2055_12_19
Type: CAZyme
Location: 23486 - 25390 (+)
Type: CAZyme
Location: 23486 - 25390 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Anthropogastromicrobium
Species
Anthropogastromicrobium aceti
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2055_12_17 | vegan > omnivore | 2.26056 | 0.00667 |
| HRGMv2_2055_12_17 | vegetarian > omnivore | 1.37039 | 0.01089 |
| HRGMv2_2055_12_18 | vegan > omnivore | 1.02570 | 0.00701 |