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Cluster: HRGMv2_2054_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2054_6 HRGMv2_2054_6_15 17709 19613 + 9.B.18.2.1
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_16 19606 21369 + GT4
TC HRGMv2_2054_6 HRGMv2_2054_6_17 21353 22459 + 9.B.183.1.9
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_18 22490 23590 + GT4
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_19 23689 24621 + GT2
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_20 24638 25342 + GT32
pfam HRGMv2_2054_6 HRGMv2_2054_6_21 25354 26328 + DUF6625
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_22 26335 27597 + GT4
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_23 27545 28579 + GT2
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_24 28576 29589 + GT2
pfam HRGMv2_2054_6 HRGMv2_2054_6_25 29597 30811 + PS_pyruv_trans
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_26 30753 31751 + GT2
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_27 31754 32782 + GT2
TC HRGMv2_2054_6 HRGMv2_2054_6_28 32742 33581 + 3.A.1.103.5
TC HRGMv2_2054_6 HRGMv2_2054_6_29 33600 35078 + 3.A.1.103.5
pfam HRGMv2_2054_6 HRGMv2_2054_6_30 35026 35937 + PS_pyruv_trans
CAZyme HRGMv2_2054_6 HRGMv2_2054_6_31 35906 36928 + GT2
Gene ID: HRGMv2_2054_6_15
Type: TC
Location: 17709 - 19613 (+)
Gene ID: HRGMv2_2054_6_16
Type: CAZyme
Location: 19606 - 21369 (+)
Gene ID: HRGMv2_2054_6_17
Type: TC
Location: 21353 - 22459 (+)
Gene ID: HRGMv2_2054_6_18
Type: CAZyme
Location: 22490 - 23590 (+)
Gene ID: HRGMv2_2054_6_19
Type: CAZyme
Location: 23689 - 24621 (+)
Gene ID: HRGMv2_2054_6_20
Type: CAZyme
Location: 24638 - 25342 (+)
Gene ID: HRGMv2_2054_6_21
Type: pfam
Location: 25354 - 26328 (+)
Gene ID: HRGMv2_2054_6_22
Type: CAZyme
Location: 26335 - 27597 (+)
Gene ID: HRGMv2_2054_6_23
Type: CAZyme
Location: 27545 - 28579 (+)
Gene ID: HRGMv2_2054_6_24
Type: CAZyme
Location: 28576 - 29589 (+)
Gene ID: HRGMv2_2054_6_25
Type: pfam
Location: 29597 - 30811 (+)
Gene ID: HRGMv2_2054_6_26
Type: CAZyme
Location: 30753 - 31751 (+)
Gene ID: HRGMv2_2054_6_27
Type: CAZyme
Location: 31754 - 32782 (+)
Gene ID: HRGMv2_2054_6_28
Type: TC
Location: 32742 - 33581 (+)
Gene ID: HRGMv2_2054_6_29
Type: TC
Location: 33600 - 35078 (+)
Gene ID: HRGMv2_2054_6_30
Type: pfam
Location: 35026 - 35937 (+)
Gene ID: HRGMv2_2054_6_31
Type: CAZyme
Location: 35906 - 36928 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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