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Cluster: HRGMv2_2054_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2054_1 HRGMv2_2054_1_84 120918 121985 + 3.A.1.5.15
TC HRGMv2_2054_1 HRGMv2_2054_1_85 121972 122772 + 3.A.1.5.19
TC HRGMv2_2054_1 HRGMv2_2054_1_86 122774 124366 + 3.A.1.5.39
TC HRGMv2_2054_1 HRGMv2_2054_1_87 124380 125321 + 3.A.1.5.11
TC HRGMv2_2054_1 HRGMv2_2054_1_88 125314 126150 + 3.A.1.5.20
TC HRGMv2_2054_1 HRGMv2_2054_1_89 126152 127879 + 3.A.1.106.2
TC HRGMv2_2054_1 HRGMv2_2054_1_90 128072 129019 + 3.A.1.5.3
TC HRGMv2_2054_1 HRGMv2_2054_1_91 129012 129860 + 3.A.1.5.38
TC HRGMv2_2054_1 HRGMv2_2054_1_92 129864 130640 + 3.A.1.5.12
TC HRGMv2_2054_1 HRGMv2_2054_1_93 130644 131402 + 3.A.1.5.19
TC HRGMv2_2054_1 HRGMv2_2054_1_94 131479 133104 + 3.A.1.5.20
CAZyme HRGMv2_2054_1 HRGMv2_2054_1_95 133339 138522 + CBM32
peptidase HRGMv2_2054_1 HRGMv2_2054_1_96 138810 140078 + M18.UPW
pfam HRGMv2_2054_1 HRGMv2_2054_1_97 140307 140636 + Trns_repr_metal
TC HRGMv2_2054_1 HRGMv2_2054_1_98 140719 143286 + 3.A.3.5.15
TC HRGMv2_2054_1 HRGMv2_2054_1_99 143721 145109 + 1.A.26.1.3
Gene ID: HRGMv2_2054_1_84
Type: TC
Location: 120918 - 121985 (+)
Gene ID: HRGMv2_2054_1_85
Type: TC
Location: 121972 - 122772 (+)
Gene ID: HRGMv2_2054_1_86
Type: TC
Location: 122774 - 124366 (+)
Gene ID: HRGMv2_2054_1_87
Type: TC
Location: 124380 - 125321 (+)
Gene ID: HRGMv2_2054_1_88
Type: TC
Location: 125314 - 126150 (+)
Gene ID: HRGMv2_2054_1_89
Type: TC
Location: 126152 - 127879 (+)
Gene ID: HRGMv2_2054_1_90
Type: TC
Location: 128072 - 129019 (+)
Gene ID: HRGMv2_2054_1_91
Type: TC
Location: 129012 - 129860 (+)
Gene ID: HRGMv2_2054_1_92
Type: TC
Location: 129864 - 130640 (+)
Gene ID: HRGMv2_2054_1_93
Type: TC
Location: 130644 - 131402 (+)
Gene ID: HRGMv2_2054_1_94
Type: TC
Location: 131479 - 133104 (+)
Gene ID: HRGMv2_2054_1_95
Type: CAZyme
Location: 133339 - 138522 (+)
Gene ID: HRGMv2_2054_1_96
Type: peptidase
Location: 138810 - 140078 (+)
Gene ID: HRGMv2_2054_1_97
Type: pfam
Location: 140307 - 140636 (+)
Gene ID: HRGMv2_2054_1_98
Type: TC
Location: 140719 - 143286 (+)
Gene ID: HRGMv2_2054_1_99
Type: TC
Location: 143721 - 145109 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2054_1_99 vegan > omnivore 1.01112 0.03489

🧭 Explore Read Mapping of CGC

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