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Cluster: HRGMv2_2054_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2054_28 HRGMv2_2054_28_15 16145 16948 + 3.A.1.104.1
TC HRGMv2_2054_28 HRGMv2_2054_28_16 16970 18229 + 3.A.1.103.6
pfam HRGMv2_2054_28 HRGMv2_2054_28_17 18243 20330 + Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_2054_28 HRGMv2_2054_28_18 20331 23024 + GT2
STP HRGMv2_2054_28 HRGMv2_2054_28_19 23178 24488 + SBP_bac_1
TC HRGMv2_2054_28 HRGMv2_2054_28_20 24499 26322 + 9.B.33.1.1
TF HRGMv2_2054_28 HRGMv2_2054_28_21 26297 27025 + HTH_AraC
pfam HRGMv2_2054_28 HRGMv2_2054_28_22 27219 30569 + Big_2 | Big_2 | Big_2
CAZyme HRGMv2_2054_28 HRGMv2_2054_28_23 30603 33269 + GH3
Gene ID: HRGMv2_2054_28_15
Type: TC
Location: 16145 - 16948 (+)
Gene ID: HRGMv2_2054_28_16
Type: TC
Location: 16970 - 18229 (+)
Gene ID: HRGMv2_2054_28_17
Type: pfam
Location: 18243 - 20330 (+)
Gene ID: HRGMv2_2054_28_18
Type: CAZyme
Location: 20331 - 23024 (+)
Gene ID: HRGMv2_2054_28_19
Type: STP
Location: 23178 - 24488 (+)
Gene ID: HRGMv2_2054_28_20
Type: TC
Location: 24499 - 26322 (+)
Gene ID: HRGMv2_2054_28_21
Type: TF
Location: 26297 - 27025 (+)
Gene ID: HRGMv2_2054_28_22
Type: pfam
Location: 27219 - 30569 (+)
Gene ID: HRGMv2_2054_28_23
Type: CAZyme
Location: 30603 - 33269 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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