Cluster: HRGMv2_2054_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2054
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2054_1 | HRGMv2_2054_1_41 | 59090 | 60073 | + | 4.A.6.1.10 |
| TC | HRGMv2_2054_1 | HRGMv2_2054_1_42 | 60186 | 60998 | + | 4.A.6.1.19 |
| TC | HRGMv2_2054_1 | HRGMv2_2054_1_43 | 60995 | 61825 | + | 4.A.6.1.19 |
| CAZyme | HRGMv2_2054_1 | HRGMv2_2054_1_44 | 61851 | 63533 | + | GH13_31 |
Gene ID: HRGMv2_2054_1_41
Type: TC
Location: 59090 - 60073 (+)
Type: TC
Location: 59090 - 60073 (+)
Gene ID: HRGMv2_2054_1_42
Type: TC
Location: 60186 - 60998 (+)
Type: TC
Location: 60186 - 60998 (+)
Gene ID: HRGMv2_2054_1_43
Type: TC
Location: 60995 - 61825 (+)
Type: TC
Location: 60995 - 61825 (+)
Gene ID: HRGMv2_2054_1_44
Type: CAZyme
Location: 61851 - 63533 (+)
Type: CAZyme
Location: 61851 - 63533 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Hominisplanchenecus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2054_1_42 | vegan > omnivore | 1.22358 | 0.00933 |
| HRGMv2_2054_1_42 | vegetarian > omnivore | 1.07166 | 0.02882 |
| HRGMv2_2054_1_43 | vegan > omnivore | 1.09556 | 0.01082 |
| HRGMv2_2054_1_43 | vegetarian > omnivore | 1.16062 | 0.02882 |
| HRGMv2_2054_1_44 | vegetarian > omnivore | 1.17053 | 0.02242 |