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Cluster: HRGMv2_2054_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2054_19 HRGMv2_2054_19_8 9173 15163 - GH2
STP HRGMv2_2054_19 HRGMv2_2054_19_9 15270 16094 - Response_reg
pfam HRGMv2_2054_19 HRGMv2_2054_19_10 16072 17949 - His_kinase
TC HRGMv2_2054_19 HRGMv2_2054_19_11 17921 19522 - 3.A.1.5.22
CAZyme HRGMv2_2054_19 HRGMv2_2054_19_12 19727 26242 - CBM51 | GH2
TF HRGMv2_2054_19 HRGMv2_2054_19_13 26995 29259 - HTH_AraC | HTH_AraC
pfam HRGMv2_2054_19 HRGMv2_2054_19_14 29302 30789 - DUF3502
CAZyme HRGMv2_2054_19 HRGMv2_2054_19_15 30930 33932 - GH123
Gene ID: HRGMv2_2054_19_8
Type: CAZyme
Location: 9173 - 15163 (-)
Gene ID: HRGMv2_2054_19_9
Type: STP
Location: 15270 - 16094 (-)
Gene ID: HRGMv2_2054_19_10
Type: pfam
Location: 16072 - 17949 (-)
Gene ID: HRGMv2_2054_19_11
Type: TC
Location: 17921 - 19522 (-)
Gene ID: HRGMv2_2054_19_12
Type: CAZyme
Location: 19727 - 26242 (-)
Gene ID: HRGMv2_2054_19_13
Type: TF
Location: 26995 - 29259 (-)
Gene ID: HRGMv2_2054_19_14
Type: pfam
Location: 29302 - 30789 (-)
Gene ID: HRGMv2_2054_19_15
Type: CAZyme
Location: 30930 - 33932 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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