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Cluster: HRGMv2_2054_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2054_10 HRGMv2_2054_10_1 685 1767 + 3.A.1.2.1
TC HRGMv2_2054_10 HRGMv2_2054_10_2 1976 3490 + 3.A.1.2.23
TC HRGMv2_2054_10 HRGMv2_2054_10_3 3490 4563 + 3.A.1.2.14
TC HRGMv2_2054_10 HRGMv2_2054_10_4 4556 5605 + 3.A.1.2.14
CAZyme HRGMv2_2054_10 HRGMv2_2054_10_5 5747 15367 + GH146 | GH43_22 | GH43_34
CAZyme HRGMv2_2054_10 HRGMv2_2054_10_6 15524 26386 + GH43_22 | GH43_26 | GH43_26 | GH43_27
pfam HRGMv2_2054_10 HRGMv2_2054_10_7 26568 27185 + Guanylate_kin
CAZyme HRGMv2_2054_10 HRGMv2_2054_10_8 27312 30434 + GH43_22
CAZyme HRGMv2_2054_10 HRGMv2_2054_10_9 31209 34607 - CBM62 | GH30_5
Gene ID: HRGMv2_2054_10_1
Type: TC
Location: 685 - 1767 (+)
Gene ID: HRGMv2_2054_10_2
Type: TC
Location: 1976 - 3490 (+)
Gene ID: HRGMv2_2054_10_3
Type: TC
Location: 3490 - 4563 (+)
Gene ID: HRGMv2_2054_10_4
Type: TC
Location: 4556 - 5605 (+)
Gene ID: HRGMv2_2054_10_5
Type: CAZyme
Location: 5747 - 15367 (+)
Gene ID: HRGMv2_2054_10_6
Type: CAZyme
Location: 15524 - 26386 (+)
Gene ID: HRGMv2_2054_10_7
Type: pfam
Location: 26568 - 27185 (+)
Gene ID: HRGMv2_2054_10_8
Type: CAZyme
Location: 27312 - 30434 (+)
Gene ID: HRGMv2_2054_10_9
Type: CAZyme
Location: 31209 - 34607 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2054_10_1 vegetarian > vegan 1.40750 0.00701

🧭 Explore Read Mapping of CGC

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