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Cluster: HRGMv2_2054_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2054_8 HRGMv2_2054_8_25 27919 30489 - GH20
pfam HRGMv2_2054_8 HRGMv2_2054_8_26 30831 31706 + DegV
TC HRGMv2_2054_8 HRGMv2_2054_8_27 31810 32394 - 2.A.115.2.14
TC HRGMv2_2054_8 HRGMv2_2054_8_28 32436 33176 - 3.A.1.3.25
TC HRGMv2_2054_8 HRGMv2_2054_8_29 33166 33834 - 3.A.1.3.25
TC HRGMv2_2054_8 HRGMv2_2054_8_30 34062 34910 - 3.A.1.3.25
TF HRGMv2_2054_8 HRGMv2_2054_8_31 35170 35547 + Fe_dep_repress
TC HRGMv2_2054_8 HRGMv2_2054_8_32 35617 37482 - 3.A.3.6.10
Gene ID: HRGMv2_2054_8_25
Type: CAZyme
Location: 27919 - 30489 (-)
Gene ID: HRGMv2_2054_8_26
Type: pfam
Location: 30831 - 31706 (+)
Gene ID: HRGMv2_2054_8_27
Type: TC
Location: 31810 - 32394 (-)
Gene ID: HRGMv2_2054_8_28
Type: TC
Location: 32436 - 33176 (-)
Gene ID: HRGMv2_2054_8_29
Type: TC
Location: 33166 - 33834 (-)
Gene ID: HRGMv2_2054_8_30
Type: TC
Location: 34062 - 34910 (-)
Gene ID: HRGMv2_2054_8_31
Type: TF
Location: 35170 - 35547 (+)
Gene ID: HRGMv2_2054_8_32
Type: TC
Location: 35617 - 37482 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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