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Cluster: HRGMv2_2054_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2054_7 HRGMv2_2054_7_9 10014 11480 + GT4
pfam HRGMv2_2054_7 HRGMv2_2054_7_10 11501 12979 + PelG
CAZyme HRGMv2_2054_7 HRGMv2_2054_7_11 12976 14175 + GT4
pfam HRGMv2_2054_7 HRGMv2_2054_7_12 14257 15570 + DUF4832 | DUF4874
pfam HRGMv2_2054_7 HRGMv2_2054_7_13 15626 17059 - DUF4832 | DUF4874
TC HRGMv2_2054_7 HRGMv2_2054_7_14 17244 18791 + 2.A.66.1.40
CAZyme HRGMv2_2054_7 HRGMv2_2054_7_15 18794 19876 + GT2
Gene ID: HRGMv2_2054_7_9
Type: CAZyme
Location: 10014 - 11480 (+)
Gene ID: HRGMv2_2054_7_10
Type: pfam
Location: 11501 - 12979 (+)
Gene ID: HRGMv2_2054_7_11
Type: CAZyme
Location: 12976 - 14175 (+)
Gene ID: HRGMv2_2054_7_12
Type: pfam
Location: 14257 - 15570 (+)
Gene ID: HRGMv2_2054_7_13
Type: pfam
Location: 15626 - 17059 (-)
Gene ID: HRGMv2_2054_7_14
Type: TC
Location: 17244 - 18791 (+)
Gene ID: HRGMv2_2054_7_15
Type: CAZyme
Location: 18794 - 19876 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2054_7_9 vegan > omnivore 1.20628 0.01735

🧭 Explore Read Mapping of CGC

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