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Cluster: HRGMv2_2043_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2043_3 HRGMv2_2043_3_144 182618 183232 - 9.B.28.1.2
TF HRGMv2_2043_3 HRGMv2_2043_3_145 183245 184273 - LacI
CAZyme HRGMv2_2043_3 HRGMv2_2043_3_146 184395 185885 - GH77
TC HRGMv2_2043_3 HRGMv2_2043_3_147 185906 186832 - 3.A.1.1.45
TC HRGMv2_2043_3 HRGMv2_2043_3_148 186832 187758 - 3.A.1.1.45
TC HRGMv2_2043_3 HRGMv2_2043_3_149 187896 189185 - 3.A.1.1.45
CAZyme HRGMv2_2043_3 HRGMv2_2043_3_150 189587 191839 - GT35
TF HRGMv2_2043_3 HRGMv2_2043_3_151 191970 192848 + HTH_AraC | HTH_AraC
TF HRGMv2_2043_3 HRGMv2_2043_3_152 192854 193744 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2043_3 HRGMv2_2043_3_153 193940 195613 + GH13_31
TC HRGMv2_2043_3 HRGMv2_2043_3_154 195797 197878 - 3.A.3.32.3
pfam HRGMv2_2043_3 HRGMv2_2043_3_155 198021 198332 - DUF6110
TC HRGMv2_2043_3 HRGMv2_2043_3_156 198652 200517 - 3.A.3.6.10
STP HRGMv2_2043_3 HRGMv2_2043_3_157 200652 200870 - HMA
TF HRGMv2_2043_3 HRGMv2_2043_3_158 200926 201288 - HTH_5
TC HRGMv2_2043_3 HRGMv2_2043_3_159 201743 203101 + 2.A.38.1.1
TC HRGMv2_2043_3 HRGMv2_2043_3_160 203111 204550 + 2.A.38.1.1
Gene ID: HRGMv2_2043_3_144
Type: TC
Location: 182618 - 183232 (-)
Gene ID: HRGMv2_2043_3_145
Type: TF
Location: 183245 - 184273 (-)
Gene ID: HRGMv2_2043_3_146
Type: CAZyme
Location: 184395 - 185885 (-)
Gene ID: HRGMv2_2043_3_147
Type: TC
Location: 185906 - 186832 (-)
Gene ID: HRGMv2_2043_3_148
Type: TC
Location: 186832 - 187758 (-)
Gene ID: HRGMv2_2043_3_149
Type: TC
Location: 187896 - 189185 (-)
Gene ID: HRGMv2_2043_3_150
Type: CAZyme
Location: 189587 - 191839 (-)
Gene ID: HRGMv2_2043_3_151
Type: TF
Location: 191970 - 192848 (+)
Gene ID: HRGMv2_2043_3_152
Type: TF
Location: 192854 - 193744 (-)
Gene ID: HRGMv2_2043_3_153
Type: CAZyme
Location: 193940 - 195613 (+)
Gene ID: HRGMv2_2043_3_154
Type: TC
Location: 195797 - 197878 (-)
Gene ID: HRGMv2_2043_3_155
Type: pfam
Location: 198021 - 198332 (-)
Gene ID: HRGMv2_2043_3_156
Type: TC
Location: 198652 - 200517 (-)
Gene ID: HRGMv2_2043_3_157
Type: STP
Location: 200652 - 200870 (-)
Gene ID: HRGMv2_2043_3_158
Type: TF
Location: 200926 - 201288 (-)
Gene ID: HRGMv2_2043_3_159
Type: TC
Location: 201743 - 203101 (+)
Gene ID: HRGMv2_2043_3_160
Type: TC
Location: 203111 - 204550 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2043_3_147 vegan > omnivore 2.68458 0.01598
HRGMv2_2043_3_148 vegan > omnivore 1.93283 0.01598
HRGMv2_2043_3_150 vegan > omnivore 2.09736 0.01598
HRGMv2_2043_3_155 vegan > omnivore 1.34096 0.01598

🧭 Explore Read Mapping of CGC

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