Cluster: HRGMv2_2042_CGC6
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 10
- Substrate:
- Genome ID: HRGMv2_2042
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_16 | 21838 | 23862 | + | GH120 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_17 | 23988 | 25976 | + | GH120 |
| TC | HRGMv2_2042_2 | HRGMv2_2042_2_18 | 26064 | 27260 | - | 2.A.37.2.2 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_19 | 27618 | 29456 | + | PL27 |
| TC | HRGMv2_2042_2 | HRGMv2_2042_2_20 | 29747 | 30676 | + | 2.A.19.5.2 |
| pfam | HRGMv2_2042_2 | HRGMv2_2042_2_21 | 30752 | 32452 | - | GrpE |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_22 | 32884 | 34677 | + | CBM32 | GH43_28 |
| NULL(UNKNOWN) | HRGMv2_2042_2 | HRGMv2_2042_2_23 | 35260 | 35793 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2042_2 | HRGMv2_2042_2_24 | 36029 | 37381 | + | SBP_bac_1 |
| TC | HRGMv2_2042_2 | HRGMv2_2042_2_25 | 37473 | 38408 | + | 3.A.1.1.32 |
| TC | HRGMv2_2042_2 | HRGMv2_2042_2_26 | 38423 | 39262 | + | 3.A.1.1.41 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_27 | 39302 | 42688 | + | GH31_3 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_28 | 42812 | 44479 | + | GH66 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_29 | 44517 | 45857 | + | GH27 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_30 | 45859 | 47568 | + | GH13_20 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_31 | 47594 | 50962 | + | GH31_3 |
| CAZyme | HRGMv2_2042_2 | HRGMv2_2042_2_32 | 51266 | 52723 | - | GH29 |
| TC | HRGMv2_2042_2 | HRGMv2_2042_2_33 | 53121 | 54113 | + | 3.A.1.23.5 |
| pfam | HRGMv2_2042_2 | HRGMv2_2042_2_34 | 54137 | 54907 | + | CbiQ |
| TC | HRGMv2_2042_2 | HRGMv2_2042_2_35 | 55019 | 55759 | + | 3.A.1.23.3 |
Gene ID: HRGMv2_2042_2_16
Type: CAZyme
Location: 21838 - 23862 (+)
Type: CAZyme
Location: 21838 - 23862 (+)
Gene ID: HRGMv2_2042_2_17
Type: CAZyme
Location: 23988 - 25976 (+)
Type: CAZyme
Location: 23988 - 25976 (+)
Gene ID: HRGMv2_2042_2_18
Type: TC
Location: 26064 - 27260 (-)
Type: TC
Location: 26064 - 27260 (-)
Gene ID: HRGMv2_2042_2_19
Type: CAZyme
Location: 27618 - 29456 (+)
Type: CAZyme
Location: 27618 - 29456 (+)
Gene ID: HRGMv2_2042_2_20
Type: TC
Location: 29747 - 30676 (+)
Type: TC
Location: 29747 - 30676 (+)
Gene ID: HRGMv2_2042_2_21
Type: pfam
Location: 30752 - 32452 (-)
Type: pfam
Location: 30752 - 32452 (-)
Gene ID: HRGMv2_2042_2_22
Type: CAZyme
Location: 32884 - 34677 (+)
Type: CAZyme
Location: 32884 - 34677 (+)
Gene ID: HRGMv2_2042_2_23
Type:
Location: 35260 - 35793 (-)
Type:
Location: 35260 - 35793 (-)
Gene ID: HRGMv2_2042_2_24
Type: STP
Location: 36029 - 37381 (+)
Type: STP
Location: 36029 - 37381 (+)
Gene ID: HRGMv2_2042_2_25
Type: TC
Location: 37473 - 38408 (+)
Type: TC
Location: 37473 - 38408 (+)
Gene ID: HRGMv2_2042_2_26
Type: TC
Location: 38423 - 39262 (+)
Type: TC
Location: 38423 - 39262 (+)
Gene ID: HRGMv2_2042_2_27
Type: CAZyme
Location: 39302 - 42688 (+)
Type: CAZyme
Location: 39302 - 42688 (+)
Gene ID: HRGMv2_2042_2_28
Type: CAZyme
Location: 42812 - 44479 (+)
Type: CAZyme
Location: 42812 - 44479 (+)
Gene ID: HRGMv2_2042_2_29
Type: CAZyme
Location: 44517 - 45857 (+)
Type: CAZyme
Location: 44517 - 45857 (+)
Gene ID: HRGMv2_2042_2_30
Type: CAZyme
Location: 45859 - 47568 (+)
Type: CAZyme
Location: 45859 - 47568 (+)
Gene ID: HRGMv2_2042_2_31
Type: CAZyme
Location: 47594 - 50962 (+)
Type: CAZyme
Location: 47594 - 50962 (+)
Gene ID: HRGMv2_2042_2_32
Type: CAZyme
Location: 51266 - 52723 (-)
Type: CAZyme
Location: 51266 - 52723 (-)
Gene ID: HRGMv2_2042_2_33
Type: TC
Location: 53121 - 54113 (+)
Type: TC
Location: 53121 - 54113 (+)
Gene ID: HRGMv2_2042_2_34
Type: pfam
Location: 54137 - 54907 (+)
Type: pfam
Location: 54137 - 54907 (+)
Gene ID: HRGMv2_2042_2_35
Type: TC
Location: 55019 - 55759 (+)
Type: TC
Location: 55019 - 55759 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Fusicatenibacter
Species
Fusicatenibacter sp900772675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2042_2_24 | vegan > omnivore | 1.31132 | 0.01873 |
| HRGMv2_2042_2_25 | vegan > omnivore | 1.40274 | 0.02487 |
| HRGMv2_2042_2_26 | vegan > omnivore | 1.06994 | 0.02487 |
| HRGMv2_2042_2_27 | vegan > omnivore | 1.22763 | 0.02487 |
| HRGMv2_2042_2_28 | vegan > omnivore | 1.62155 | 0.02487 |
| HRGMv2_2042_2_29 | vegan > omnivore | 1.23348 | 0.02487 |
| HRGMv2_2042_2_30 | vegan > omnivore | 1.16582 | 0.02487 |