dbCAN Logo

Cluster: HRGMv2_2042_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2042_72 HRGMv2_2042_72_4 2504 4294 - PL33_2
CAZyme HRGMv2_2042_72 HRGMv2_2042_72_5 4314 6101 - GH43_22 | GH43_34
TF HRGMv2_2042_72 HRGMv2_2042_72_6 6114 7034 - HTH_AraC
CAZyme HRGMv2_2042_72 HRGMv2_2042_72_7 7039 8784 - GH35
STP HRGMv2_2042_72 HRGMv2_2042_72_8 9009 10640 - SBP_bac_1
TC HRGMv2_2042_72 HRGMv2_2042_72_9 10730 11632 - 3.A.1.1.29
Gene ID: HRGMv2_2042_72_4
Type: CAZyme
Location: 2504 - 4294 (-)
Gene ID: HRGMv2_2042_72_5
Type: CAZyme
Location: 4314 - 6101 (-)
Gene ID: HRGMv2_2042_72_6
Type: TF
Location: 6114 - 7034 (-)
Gene ID: HRGMv2_2042_72_7
Type: CAZyme
Location: 7039 - 8784 (-)
Gene ID: HRGMv2_2042_72_8
Type: STP
Location: 9009 - 10640 (-)
Gene ID: HRGMv2_2042_72_9
Type: TC
Location: 10730 - 11632 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2042_72_9 vegan > omnivore 1.87952 0.02487

🧭 Explore Read Mapping of CGC

← Back to Cluster List