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Cluster: HRGMv2_2042_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2042_30 HRGMv2_2042_30_11 12846 14012 - GH33
TC HRGMv2_2042_30 HRGMv2_2042_30_12 14029 14400 - 3.A.1.1.10
TF HRGMv2_2042_30 HRGMv2_2042_30_13 14607 16379 + HTH_8
pfam HRGMv2_2042_30 HRGMv2_2042_30_14 16480 17205 - GidB | MTS | Methyltransf_31
TC HRGMv2_2042_30 HRGMv2_2042_30_15 17330 19201 - 1.C.39.4.5
pfam HRGMv2_2042_30 HRGMv2_2042_30_16 19332 20720 - Arf | Ras | MMR_HSR1 | FeoB_N | TrmE_N | MnmE_helical
pfam HRGMv2_2042_30 HRGMv2_2042_30_17 20892 21716 - R3H | KH_KhpA-B | Jag_N
TC HRGMv2_2042_30 HRGMv2_2042_30_18 21730 23025 - 2.A.9.3.2
Gene ID: HRGMv2_2042_30_11
Type: CAZyme
Location: 12846 - 14012 (-)
Gene ID: HRGMv2_2042_30_12
Type: TC
Location: 14029 - 14400 (-)
Gene ID: HRGMv2_2042_30_13
Type: TF
Location: 14607 - 16379 (+)
Gene ID: HRGMv2_2042_30_14
Type: pfam
Location: 16480 - 17205 (-)
Gene ID: HRGMv2_2042_30_15
Type: TC
Location: 17330 - 19201 (-)
Gene ID: HRGMv2_2042_30_16
Type: pfam
Location: 19332 - 20720 (-)
Gene ID: HRGMv2_2042_30_17
Type: pfam
Location: 20892 - 21716 (-)
Gene ID: HRGMv2_2042_30_18
Type: TC
Location: 21730 - 23025 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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