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Cluster: HRGMv2_2042_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2042_18 HRGMv2_2042_18_24 27341 27949 + 2.A.88.6.1
CAZyme HRGMv2_2042_18 HRGMv2_2042_18_25 28180 30189 - GH127
TF HRGMv2_2042_18 HRGMv2_2042_18_26 30537 31469 + HTH_AraC | HTH_AraC
TC HRGMv2_2042_18 HRGMv2_2042_18_27 31739 34795 - 9.B.74.1.4
STP HRGMv2_2042_18 HRGMv2_2042_18_28 35144 35803 + TetR_N
pfam HRGMv2_2042_18 HRGMv2_2042_18_29 36009 36782 - Lipase_GDSL_2
TC HRGMv2_2042_18 HRGMv2_2042_18_30 37134 38054 + 8.A.5.1.7
CAZyme HRGMv2_2042_18 HRGMv2_2042_18_31 38359 40359 - GH31_4
TC HRGMv2_2042_18 HRGMv2_2042_18_32 40634 41326 - 1.C.82.1.1
Gene ID: HRGMv2_2042_18_24
Type: TC
Location: 27341 - 27949 (+)
Gene ID: HRGMv2_2042_18_25
Type: CAZyme
Location: 28180 - 30189 (-)
Gene ID: HRGMv2_2042_18_26
Type: TF
Location: 30537 - 31469 (+)
Gene ID: HRGMv2_2042_18_27
Type: TC
Location: 31739 - 34795 (-)
Gene ID: HRGMv2_2042_18_28
Type: STP
Location: 35144 - 35803 (+)
Gene ID: HRGMv2_2042_18_29
Type: pfam
Location: 36009 - 36782 (-)
Gene ID: HRGMv2_2042_18_30
Type: TC
Location: 37134 - 38054 (+)
Gene ID: HRGMv2_2042_18_31
Type: CAZyme
Location: 38359 - 40359 (-)
Gene ID: HRGMv2_2042_18_32
Type: TC
Location: 40634 - 41326 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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