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Cluster: HRGMv2_2042_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2042_16 HRGMv2_2042_16_30 31095 32729 - 3.A.1.106.4
TC HRGMv2_2042_16 HRGMv2_2042_16_31 32729 34459 - 3.A.1.117.1
TF HRGMv2_2042_16 HRGMv2_2042_16_32 34449 34961 - MarR
TC HRGMv2_2042_16 HRGMv2_2042_16_33 35152 36552 + 2.A.22.5.3
sulfatase HRGMv2_2042_16 HRGMv2_2042_16_34 36771 37571 - S1_2
CAZyme HRGMv2_2042_16 HRGMv2_2042_16_35 37605 38720 - GH88
pfam HRGMv2_2042_16 HRGMv2_2042_16_36 38735 39532 - DUF7402
pfam HRGMv2_2042_16 HRGMv2_2042_16_37 39547 40410 - KduI
CAZyme HRGMv2_2042_16 HRGMv2_2042_16_38 40686 42734 - GH154
TF HRGMv2_2042_16 HRGMv2_2042_16_39 42929 43822 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_2042_16 HRGMv2_2042_16_40 43910 45682 - CBM34 | GH13_20
Gene ID: HRGMv2_2042_16_30
Type: TC
Location: 31095 - 32729 (-)
Gene ID: HRGMv2_2042_16_31
Type: TC
Location: 32729 - 34459 (-)
Gene ID: HRGMv2_2042_16_32
Type: TF
Location: 34449 - 34961 (-)
Gene ID: HRGMv2_2042_16_33
Type: TC
Location: 35152 - 36552 (+)
Gene ID: HRGMv2_2042_16_34
Type: sulfatase
Location: 36771 - 37571 (-)
Gene ID: HRGMv2_2042_16_35
Type: CAZyme
Location: 37605 - 38720 (-)
Gene ID: HRGMv2_2042_16_36
Type: pfam
Location: 38735 - 39532 (-)
Gene ID: HRGMv2_2042_16_37
Type: pfam
Location: 39547 - 40410 (-)
Gene ID: HRGMv2_2042_16_38
Type: CAZyme
Location: 40686 - 42734 (-)
Gene ID: HRGMv2_2042_16_39
Type: TF
Location: 42929 - 43822 (+)
Gene ID: HRGMv2_2042_16_40
Type: CAZyme
Location: 43910 - 45682 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2042_16_40 vegan > omnivore 2.59568 0.02487

🧭 Explore Read Mapping of CGC

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