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Cluster: HRGMv2_2042_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2042_10 HRGMv2_2042_10_36 37538 38890 + 2.A.66.1.33
pfam HRGMv2_2042_10 HRGMv2_2042_10_37 39081 40304 - GARS_A | ATP-grasp | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | ATP-grasp_4
CAZyme HRGMv2_2042_10 HRGMv2_2042_10_38 40301 41248 - GT2
STP HRGMv2_2042_10 HRGMv2_2042_10_39 41245 42219 - PALP
peptidase HRGMv2_2042_10 HRGMv2_2042_10_40 42442 43551 - M20.UPB
TC HRGMv2_2042_10 HRGMv2_2042_10_41 43878 44636 - 3.A.1.3.13
TC HRGMv2_2042_10 HRGMv2_2042_10_42 44623 45375 - 3.A.1.3.13
pfam HRGMv2_2042_10 HRGMv2_2042_10_43 45391 45891 - Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_10
TC HRGMv2_2042_10 HRGMv2_2042_10_44 46055 46984 - 3.A.1.3.13
pfam HRGMv2_2042_10 HRGMv2_2042_10_45 47076 48314 - GST_C_2
TC HRGMv2_2042_10 HRGMv2_2042_10_46 49053 50306 + 9.A.40.2.4
Gene ID: HRGMv2_2042_10_36
Type: TC
Location: 37538 - 38890 (+)
Gene ID: HRGMv2_2042_10_37
Type: pfam
Location: 39081 - 40304 (-)
Gene ID: HRGMv2_2042_10_38
Type: CAZyme
Location: 40301 - 41248 (-)
Gene ID: HRGMv2_2042_10_39
Type: STP
Location: 41245 - 42219 (-)
Gene ID: HRGMv2_2042_10_40
Type: peptidase
Location: 42442 - 43551 (-)
Gene ID: HRGMv2_2042_10_41
Type: TC
Location: 43878 - 44636 (-)
Gene ID: HRGMv2_2042_10_42
Type: TC
Location: 44623 - 45375 (-)
Gene ID: HRGMv2_2042_10_43
Type: pfam
Location: 45391 - 45891 (-)
Gene ID: HRGMv2_2042_10_44
Type: TC
Location: 46055 - 46984 (-)
Gene ID: HRGMv2_2042_10_45
Type: pfam
Location: 47076 - 48314 (-)
Gene ID: HRGMv2_2042_10_46
Type: TC
Location: 49053 - 50306 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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