dbCAN Logo

Cluster: HRGMv2_2042_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2042_3 HRGMv2_2042_3_2 1316 3511 + GH36
pfam HRGMv2_2042_3 HRGMv2_2042_3_3 3709 4593 + SH3_3
TF HRGMv2_2042_3 HRGMv2_2042_3_4 5064 6026 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2042_3 HRGMv2_2042_3_5 6128 7759 + GH13_31
TF HRGMv2_2042_3 HRGMv2_2042_3_6 7826 9322 + HTH_AraC | HTH_AraC
STP HRGMv2_2042_3 HRGMv2_2042_3_7 9300 11012 + HATPase_c | dCache_1
TC HRGMv2_2042_3 HRGMv2_2042_3_8 11296 12252 + 3.A.1.1.29
TC HRGMv2_2042_3 HRGMv2_2042_3_9 12264 13163 + 3.A.1.1.29
TC HRGMv2_2042_3 HRGMv2_2042_3_10 13185 14807 + 3.A.1.1.29
peptidase HRGMv2_2042_3 HRGMv2_2042_3_11 14985 16868 + S12.UPW
TC HRGMv2_2042_3 HRGMv2_2042_3_12 16956 18020 - 9.A.23.1.1
Gene ID: HRGMv2_2042_3_2
Type: CAZyme
Location: 1316 - 3511 (+)
Gene ID: HRGMv2_2042_3_3
Type: pfam
Location: 3709 - 4593 (+)
Gene ID: HRGMv2_2042_3_4
Type: TF
Location: 5064 - 6026 (-)
Gene ID: HRGMv2_2042_3_5
Type: CAZyme
Location: 6128 - 7759 (+)
Gene ID: HRGMv2_2042_3_6
Type: TF
Location: 7826 - 9322 (+)
Gene ID: HRGMv2_2042_3_7
Type: STP
Location: 9300 - 11012 (+)
Gene ID: HRGMv2_2042_3_8
Type: TC
Location: 11296 - 12252 (+)
Gene ID: HRGMv2_2042_3_9
Type: TC
Location: 12264 - 13163 (+)
Gene ID: HRGMv2_2042_3_10
Type: TC
Location: 13185 - 14807 (+)
Gene ID: HRGMv2_2042_3_11
Type: peptidase
Location: 14985 - 16868 (+)
Gene ID: HRGMv2_2042_3_12
Type: TC
Location: 16956 - 18020 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List