Cluster: HRGMv2_2040_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_06088
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_3 | HRGMv2_2040_3_66 | 74862 | 76703 | - | GT8 | GT8 |
| TC | HRGMv2_2040_3 | HRGMv2_2040_3_67 | 76828 | 78975 | + | 9.B.74.1.1 |
| NULL(UNKNOWN) | HRGMv2_2040_3 | HRGMv2_2040_3_68 | 78991 | 79341 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2040_3 | HRGMv2_2040_3_69 | 79338 | 81083 | + | 9.B.74.1.1 |
| TC | HRGMv2_2040_3 | HRGMv2_2040_3_70 | 81372 | 83015 | - | 3.A.1.112.9 |
Gene ID: HRGMv2_2040_3_66
Type: CAZyme
Location: 74862 - 76703 (-)
Type: CAZyme
Location: 74862 - 76703 (-)
Gene ID: HRGMv2_2040_3_67
Type: TC
Location: 76828 - 78975 (+)
Type: TC
Location: 76828 - 78975 (+)
Gene ID: HRGMv2_2040_3_68
Type:
Location: 78991 - 79341 (+)
Type:
Location: 78991 - 79341 (+)
Gene ID: HRGMv2_2040_3_69
Type: TC
Location: 79338 - 81083 (+)
Type: TC
Location: 79338 - 81083 (+)
Gene ID: HRGMv2_2040_3_70
Type: TC
Location: 81372 - 83015 (-)
Type: TC
Location: 81372 - 83015 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.