Cluster: HRGMv2_2040_CGC4
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_00237
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_3 | HRGMv2_2040_3_23 | 30020 | 31084 | - | GT111 |
| TF | HRGMv2_2040_3 | HRGMv2_2040_3_24 | 31087 | 31632 | - | HTH_11 |
| pfam | HRGMv2_2040_3 | HRGMv2_2040_3_25 | 31665 | 32525 | - | QRPTase_C | QRPTase_N |
| TC | HRGMv2_2040_3 | HRGMv2_2040_3_26 | 32549 | 33886 | - | 3.D.10.1.4 |
| pfam | HRGMv2_2040_3 | HRGMv2_2040_3_27 | 33922 | 34827 | - | NadA |
| TF | HRGMv2_2040_3 | HRGMv2_2040_3_28 | 35046 | 35405 | - | HTH_5 |
| TC | HRGMv2_2040_3 | HRGMv2_2040_3_29 | 35422 | 37317 | - | 3.A.3.6.10 |
Gene ID: HRGMv2_2040_3_23
Type: CAZyme
Location: 30020 - 31084 (-)
Type: CAZyme
Location: 30020 - 31084 (-)
Gene ID: HRGMv2_2040_3_24
Type: TF
Location: 31087 - 31632 (-)
Type: TF
Location: 31087 - 31632 (-)
Gene ID: HRGMv2_2040_3_25
Type: pfam
Location: 31665 - 32525 (-)
Type: pfam
Location: 31665 - 32525 (-)
Gene ID: HRGMv2_2040_3_26
Type: TC
Location: 32549 - 33886 (-)
Type: TC
Location: 32549 - 33886 (-)
Gene ID: HRGMv2_2040_3_27
Type: pfam
Location: 33922 - 34827 (-)
Type: pfam
Location: 33922 - 34827 (-)
Gene ID: HRGMv2_2040_3_28
Type: TF
Location: 35046 - 35405 (-)
Type: TF
Location: 35046 - 35405 (-)
Gene ID: HRGMv2_2040_3_29
Type: TC
Location: 35422 - 37317 (-)
Type: TC
Location: 35422 - 37317 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.