Cluster: HRGMv2_2040_CGC35
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_01422
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_87 | HRGMv2_2040_87_3 | 2163 | 2879 | + | 1.C.113.1.3 |
| STP | HRGMv2_2040_87 | HRGMv2_2040_87_4 | 3059 | 3862 | - | Peptidase_M23 |
| CAZyme | HRGMv2_2040_87 | HRGMv2_2040_87_5 | 4005 | 4814 | - | GT35 |
Gene ID: HRGMv2_2040_87_3
Type: TC
Location: 2163 - 2879 (+)
Type: TC
Location: 2163 - 2879 (+)
Gene ID: HRGMv2_2040_87_4
Type: STP
Location: 3059 - 3862 (-)
Type: STP
Location: 3059 - 3862 (-)
Gene ID: HRGMv2_2040_87_5
Type: CAZyme
Location: 4005 - 4814 (-)
Type: CAZyme
Location: 4005 - 4814 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.