Cluster: HRGMv2_2040_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_00124
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_49 | HRGMv2_2040_49_2 | 862 | 3579 | + | GT51 |
| pfam | HRGMv2_2040_49 | HRGMv2_2040_49_3 | 3628 | 3987 | - | SpoVAC_SpoVAEB |
| TC | HRGMv2_2040_49 | HRGMv2_2040_49_4 | 3992 | 5005 | - | 9.A.11.1.1 |
| pfam | HRGMv2_2040_49 | HRGMv2_2040_49_5 | 5095 | 5883 | - | Ubie_methyltran | TehB | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | HRGMv2_2040_49 | HRGMv2_2040_49_6 | 5959 | 6450 | - | 9.A.11.1.1 |
Gene ID: HRGMv2_2040_49_2
Type: CAZyme
Location: 862 - 3579 (+)
Type: CAZyme
Location: 862 - 3579 (+)
Gene ID: HRGMv2_2040_49_3
Type: pfam
Location: 3628 - 3987 (-)
Type: pfam
Location: 3628 - 3987 (-)
Gene ID: HRGMv2_2040_49_4
Type: TC
Location: 3992 - 5005 (-)
Type: TC
Location: 3992 - 5005 (-)
Gene ID: HRGMv2_2040_49_5
Type: pfam
Location: 5095 - 5883 (-)
Type: pfam
Location: 5095 - 5883 (-)
Gene ID: HRGMv2_2040_49_6
Type: TC
Location: 5959 - 6450 (-)
Type: TC
Location: 5959 - 6450 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.