Cluster: HRGMv2_2040_CGC32
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_48 | HRGMv2_2040_48_1 | 287 | 2854 | + | 3.A.5.1.3 |
| pfam | HRGMv2_2040_48 | HRGMv2_2040_48_2 | 2927 | 4045 | + | RF-1 | PCRF |
| STP | HRGMv2_2040_48 | HRGMv2_2040_48_3 | 4095 | 4595 | + | CheW |
| CAZyme | HRGMv2_2040_48 | HRGMv2_2040_48_4 | 4588 | 6204 | + | GH77 |
Gene ID: HRGMv2_2040_48_1
Type: TC
Location: 287 - 2854 (+)
Type: TC
Location: 287 - 2854 (+)
Gene ID: HRGMv2_2040_48_2
Type: pfam
Location: 2927 - 4045 (+)
Type: pfam
Location: 2927 - 4045 (+)
Gene ID: HRGMv2_2040_48_3
Type: STP
Location: 4095 - 4595 (+)
Type: STP
Location: 4095 - 4595 (+)
Gene ID: HRGMv2_2040_48_4
Type: CAZyme
Location: 4588 - 6204 (+)
Type: CAZyme
Location: 4588 - 6204 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.