Cluster: HRGMv2_2040_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_01125
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_43 | HRGMv2_2040_43_1 | 2 | 1270 | - | GT4 |
| TC | HRGMv2_2040_43 | HRGMv2_2040_43_2 | 1328 | 2773 | - | 9.B.18.1.3 |
| pfam | HRGMv2_2040_43 | HRGMv2_2040_43_3 | 2816 | 4288 | - | LytR_cpsA_psr |
| TC | HRGMv2_2040_43 | HRGMv2_2040_43_4 | 4407 | 5120 | - | 8.A.3.2.3 |
Gene ID: HRGMv2_2040_43_1
Type: CAZyme
Location: 2 - 1270 (-)
Type: CAZyme
Location: 2 - 1270 (-)
Gene ID: HRGMv2_2040_43_2
Type: TC
Location: 1328 - 2773 (-)
Type: TC
Location: 1328 - 2773 (-)
Gene ID: HRGMv2_2040_43_3
Type: pfam
Location: 2816 - 4288 (-)
Type: pfam
Location: 2816 - 4288 (-)
Gene ID: HRGMv2_2040_43_4
Type: TC
Location: 4407 - 5120 (-)
Type: TC
Location: 4407 - 5120 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.