Cluster: HRGMv2_2040_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_01402
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_2 | HRGMv2_2040_2_22 | 22517 | 23881 | + | 2.A.103.1.3 |
| pfam | HRGMv2_2040_2 | HRGMv2_2040_2_23 | 23826 | 25316 | + | Transpeptidase | PBP_dimer_2 |
| CAZyme | HRGMv2_2040_2 | HRGMv2_2040_2_24 | 25380 | 26315 | + | GH23 |
Gene ID: HRGMv2_2040_2_22
Type: TC
Location: 22517 - 23881 (+)
Type: TC
Location: 22517 - 23881 (+)
Gene ID: HRGMv2_2040_2_23
Type: pfam
Location: 23826 - 25316 (+)
Type: pfam
Location: 23826 - 25316 (+)
Gene ID: HRGMv2_2040_2_24
Type: CAZyme
Location: 25380 - 26315 (+)
Type: CAZyme
Location: 25380 - 26315 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.