Cluster: HRGMv2_2040_CGC27
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_00179
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_34 | HRGMv2_2040_34_24 | 20862 | 22211 | + | 2.A.22.5.3 |
| STP | HRGMv2_2040_34 | HRGMv2_2040_34_25 | 22365 | 23150 | + | Response_reg | Spo0A_C |
| peptidase | HRGMv2_2040_34 | HRGMv2_2040_34_26 | 23277 | 24329 | + | C40.007 |
| CAZyme | HRGMv2_2040_34 | HRGMv2_2040_34_27 | 24440 | 25876 | + | GT5 |
Gene ID: HRGMv2_2040_34_24
Type: TC
Location: 20862 - 22211 (+)
Type: TC
Location: 20862 - 22211 (+)
Gene ID: HRGMv2_2040_34_25
Type: STP
Location: 22365 - 23150 (+)
Type: STP
Location: 22365 - 23150 (+)
Gene ID: HRGMv2_2040_34_26
Type: peptidase
Location: 23277 - 24329 (+)
Type: peptidase
Location: 23277 - 24329 (+)
Gene ID: HRGMv2_2040_34_27
Type: CAZyme
Location: 24440 - 25876 (+)
Type: CAZyme
Location: 24440 - 25876 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.