Cluster: HRGMv2_2040_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_02228
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_34 | HRGMv2_2040_34_1 | 85 | 954 | - | CE4 |
| peptidase | HRGMv2_2040_34 | HRGMv2_2040_34_2 | 1063 | 2310 | - | S11.UPW |
| TC | HRGMv2_2040_34 | HRGMv2_2040_34_3 | 2437 | 3138 | + | 3.A.1.122.7 |
| pfam | HRGMv2_2040_34 | HRGMv2_2040_34_4 | 3160 | 5865 | + | FtsX | FtsX | MacB_PCD |
| TC | HRGMv2_2040_34 | HRGMv2_2040_34_5 | 5917 | 6771 | + | 9.B.70.1.1 |
Gene ID: HRGMv2_2040_34_1
Type: CAZyme
Location: 85 - 954 (-)
Type: CAZyme
Location: 85 - 954 (-)
Gene ID: HRGMv2_2040_34_2
Type: peptidase
Location: 1063 - 2310 (-)
Type: peptidase
Location: 1063 - 2310 (-)
Gene ID: HRGMv2_2040_34_3
Type: TC
Location: 2437 - 3138 (+)
Type: TC
Location: 2437 - 3138 (+)
Gene ID: HRGMv2_2040_34_4
Type: pfam
Location: 3160 - 5865 (+)
Type: pfam
Location: 3160 - 5865 (+)
Gene ID: HRGMv2_2040_34_5
Type: TC
Location: 5917 - 6771 (+)
Type: TC
Location: 5917 - 6771 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.