Cluster: HRGMv2_2040_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_01465
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_32 | HRGMv2_2040_32_4 | 2627 | 4474 | - | GH13_11 |
| TC | HRGMv2_2040_32 | HRGMv2_2040_32_5 | 4490 | 5917 | - | 2.A.2.1.1 |
| pfam | HRGMv2_2040_32 | HRGMv2_2040_32_6 | 5968 | 6885 | - | Fer4_12 |
| peptidase | HRGMv2_2040_32 | HRGMv2_2040_32_7 | 6895 | 7608 | - | S14.UPW |
| CAZyme | HRGMv2_2040_32 | HRGMv2_2040_32_8 | 8196 | 9365 | + | GH25 |
| pfam | HRGMv2_2040_32 | HRGMv2_2040_32_9 | 9433 | 10419 | - | DHH |
| TC | HRGMv2_2040_32 | HRGMv2_2040_32_10 | 10545 | 11270 | + | 3.A.1.17.8 |
Gene ID: HRGMv2_2040_32_4
Type: CAZyme
Location: 2627 - 4474 (-)
Type: CAZyme
Location: 2627 - 4474 (-)
Gene ID: HRGMv2_2040_32_5
Type: TC
Location: 4490 - 5917 (-)
Type: TC
Location: 4490 - 5917 (-)
Gene ID: HRGMv2_2040_32_6
Type: pfam
Location: 5968 - 6885 (-)
Type: pfam
Location: 5968 - 6885 (-)
Gene ID: HRGMv2_2040_32_7
Type: peptidase
Location: 6895 - 7608 (-)
Type: peptidase
Location: 6895 - 7608 (-)
Gene ID: HRGMv2_2040_32_8
Type: CAZyme
Location: 8196 - 9365 (+)
Type: CAZyme
Location: 8196 - 9365 (+)
Gene ID: HRGMv2_2040_32_9
Type: pfam
Location: 9433 - 10419 (-)
Type: pfam
Location: 9433 - 10419 (-)
Gene ID: HRGMv2_2040_32_10
Type: TC
Location: 10545 - 11270 (+)
Type: TC
Location: 10545 - 11270 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.