Cluster: HRGMv2_2040_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_01447
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_23 | HRGMv2_2040_23_23 | 22441 | 24186 | + | 3.A.1.112.5 |
| TC | HRGMv2_2040_23 | HRGMv2_2040_23_24 | 24176 | 25825 | + | 3.A.1.135.8 |
| CAZyme | HRGMv2_2040_23 | HRGMv2_2040_23_25 | 25913 | 27199 | + | CE4 |
| STP | HRGMv2_2040_23 | HRGMv2_2040_23_26 | 27288 | 28586 | + | EAL |
| TC | HRGMv2_2040_23 | HRGMv2_2040_23_27 | 28573 | 29211 | + | 8.A.59.4.1 |
Gene ID: HRGMv2_2040_23_23
Type: TC
Location: 22441 - 24186 (+)
Type: TC
Location: 22441 - 24186 (+)
Gene ID: HRGMv2_2040_23_24
Type: TC
Location: 24176 - 25825 (+)
Type: TC
Location: 24176 - 25825 (+)
Gene ID: HRGMv2_2040_23_25
Type: CAZyme
Location: 25913 - 27199 (+)
Type: CAZyme
Location: 25913 - 27199 (+)
Gene ID: HRGMv2_2040_23_26
Type: STP
Location: 27288 - 28586 (+)
Type: STP
Location: 27288 - 28586 (+)
Gene ID: HRGMv2_2040_23_27
Type: TC
Location: 28573 - 29211 (+)
Type: TC
Location: 28573 - 29211 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2040_23_26 | vegan > omnivore | 1.39826 | 0.04420 |