Cluster: HRGMv2_2040_CGC20
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_20 | HRGMv2_2040_20_30 | 28531 | 29424 | - | 1.A.23.3.1 |
| pfam | HRGMv2_2040_20 | HRGMv2_2040_20_31 | 29702 | 30196 | - | DUF2798 |
| CAZyme | HRGMv2_2040_20 | HRGMv2_2040_20_32 | 30560 | 34732 | + | GH13_14 |
Gene ID: HRGMv2_2040_20_30
Type: TC
Location: 28531 - 29424 (-)
Type: TC
Location: 28531 - 29424 (-)
Gene ID: HRGMv2_2040_20_31
Type: pfam
Location: 29702 - 30196 (-)
Type: pfam
Location: 29702 - 30196 (-)
Gene ID: HRGMv2_2040_20_32
Type: CAZyme
Location: 30560 - 34732 (+)
Type: CAZyme
Location: 30560 - 34732 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.