Cluster: HRGMv2_2040_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_06087
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_1 | HRGMv2_2040_1_88 | 82491 | 83726 | + | GH28 |
| TC | HRGMv2_2040_1 | HRGMv2_2040_1_89 | 83772 | 85511 | - | 2.A.114.1.3 |
| TC | HRGMv2_2040_1 | HRGMv2_2040_1_90 | 86544 | 88655 | + | 1.B.52.2.1 |
| TC | HRGMv2_2040_1 | HRGMv2_2040_1_91 | 88716 | 89804 | - | 3.A.1.6.3 |
| TC | HRGMv2_2040_1 | HRGMv2_2040_1_92 | 89837 | 90682 | - | 3.A.1.6.1 |
| TC | HRGMv2_2040_1 | HRGMv2_2040_1_93 | 90697 | 91539 | - | 3.A.1.6.1 |
Gene ID: HRGMv2_2040_1_88
Type: CAZyme
Location: 82491 - 83726 (+)
Type: CAZyme
Location: 82491 - 83726 (+)
Gene ID: HRGMv2_2040_1_89
Type: TC
Location: 83772 - 85511 (-)
Type: TC
Location: 83772 - 85511 (-)
Gene ID: HRGMv2_2040_1_90
Type: TC
Location: 86544 - 88655 (+)
Type: TC
Location: 86544 - 88655 (+)
Gene ID: HRGMv2_2040_1_91
Type: TC
Location: 88716 - 89804 (-)
Type: TC
Location: 88716 - 89804 (-)
Gene ID: HRGMv2_2040_1_92
Type: TC
Location: 89837 - 90682 (-)
Type: TC
Location: 89837 - 90682 (-)
Gene ID: HRGMv2_2040_1_93
Type: TC
Location: 90697 - 91539 (-)
Type: TC
Location: 90697 - 91539 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.