Cluster: HRGMv2_2040_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_04033
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_19 | HRGMv2_2040_19_38 | 33259 | 33978 | - | 9.B.100.1.1 |
| pfam | HRGMv2_2040_19 | HRGMv2_2040_19_39 | 34262 | 34903 | + | DUF1836 |
| TF | HRGMv2_2040_19 | HRGMv2_2040_19_40 | 34967 | 35281 | - | Trp_repressor |
| TC | HRGMv2_2040_19 | HRGMv2_2040_19_41 | 35364 | 38051 | - | 3.A.1.122.2 |
| peptidase | HRGMv2_2040_19 | HRGMv2_2040_19_42 | 38290 | 39492 | + | M23.UPB |
| NULL(UNKNOWN) | HRGMv2_2040_19 | HRGMv2_2040_19_43 | 39518 | 40000 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2040_19 | HRGMv2_2040_19_44 | 39997 | 41625 | - | GH43_10 |
Gene ID: HRGMv2_2040_19_38
Type: TC
Location: 33259 - 33978 (-)
Type: TC
Location: 33259 - 33978 (-)
Gene ID: HRGMv2_2040_19_39
Type: pfam
Location: 34262 - 34903 (+)
Type: pfam
Location: 34262 - 34903 (+)
Gene ID: HRGMv2_2040_19_40
Type: TF
Location: 34967 - 35281 (-)
Type: TF
Location: 34967 - 35281 (-)
Gene ID: HRGMv2_2040_19_41
Type: TC
Location: 35364 - 38051 (-)
Type: TC
Location: 35364 - 38051 (-)
Gene ID: HRGMv2_2040_19_42
Type: peptidase
Location: 38290 - 39492 (+)
Type: peptidase
Location: 38290 - 39492 (+)
Gene ID: HRGMv2_2040_19_43
Type:
Location: 39518 - 40000 (+)
Type:
Location: 39518 - 40000 (+)
Gene ID: HRGMv2_2040_19_44
Type: CAZyme
Location: 39997 - 41625 (-)
Type: CAZyme
Location: 39997 - 41625 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.