Cluster: HRGMv2_2040_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2040_18 | HRGMv2_2040_18_41 | 40167 | 41138 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2040_18 | HRGMv2_2040_18_42 | 41681 | 42181 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2040_18 | HRGMv2_2040_18_43 | 42183 | 42839 | - | 3.A.1.4.4 |
| TF | HRGMv2_2040_18 | HRGMv2_2040_18_44 | 42842 | 43222 | - | GntR |
| NULL(UNKNOWN) | HRGMv2_2040_18 | HRGMv2_2040_18_45 | 43219 | 43854 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2040_18 | HRGMv2_2040_18_46 | 43859 | 44707 | - | 3.A.1.128.2 |
Gene ID: HRGMv2_2040_18_41
Type: CAZyme
Location: 40167 - 41138 (+)
Type: CAZyme
Location: 40167 - 41138 (+)
Gene ID: HRGMv2_2040_18_42
Type:
Location: 41681 - 42181 (-)
Type:
Location: 41681 - 42181 (-)
Gene ID: HRGMv2_2040_18_43
Type: TC
Location: 42183 - 42839 (-)
Type: TC
Location: 42183 - 42839 (-)
Gene ID: HRGMv2_2040_18_44
Type: TF
Location: 42842 - 43222 (-)
Type: TF
Location: 42842 - 43222 (-)
Gene ID: HRGMv2_2040_18_45
Type:
Location: 43219 - 43854 (-)
Type:
Location: 43219 - 43854 (-)
Gene ID: HRGMv2_2040_18_46
Type: TC
Location: 43859 - 44707 (-)
Type: TC
Location: 43859 - 44707 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.