Cluster: HRGMv2_2040_CGC17
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2040
- CGC Family ID: CGCFAM_03655
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2040_17 | HRGMv2_2040_17_46 | 44729 | 46576 | - | 2.A.58.2.2 |
| pfam | HRGMv2_2040_17 | HRGMv2_2040_17_47 | 46777 | 47586 | + | PHP |
| CAZyme | HRGMv2_2040_17 | HRGMv2_2040_17_48 | 47631 | 48941 | - | GH13_20 |
Gene ID: HRGMv2_2040_17_46
Type: TC
Location: 44729 - 46576 (-)
Type: TC
Location: 44729 - 46576 (-)
Gene ID: HRGMv2_2040_17_47
Type: pfam
Location: 46777 - 47586 (+)
Type: pfam
Location: 46777 - 47586 (+)
Gene ID: HRGMv2_2040_17_48
Type: CAZyme
Location: 47631 - 48941 (-)
Type: CAZyme
Location: 47631 - 48941 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.