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Cluster: HRGMv2_2040_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2040_15 HRGMv2_2040_15_43 42380 44659 + GT35
TF HRGMv2_2040_15 HRGMv2_2040_15_44 44752 46290 + HTH_AraC
TC HRGMv2_2040_15 HRGMv2_2040_15_45 46293 48050 + 9.B.33.1.1
pfam HRGMv2_2040_15 HRGMv2_2040_15_46 48166 49419 + SBP_bac_8
TC HRGMv2_2040_15 HRGMv2_2040_15_47 49456 50793 + 3.A.1.1.27
TC HRGMv2_2040_15 HRGMv2_2040_15_48 50790 51638 + 3.A.1.1.27
TC HRGMv2_2040_15 HRGMv2_2040_15_49 51643 53343 + 3.A.1.1.9
TC HRGMv2_2040_15 HRGMv2_2040_15_50 53417 54883 + 2.A.22.5.3
STP HRGMv2_2040_15 HRGMv2_2040_15_51 54887 55528 + HhH-GPD
TC HRGMv2_2040_15 HRGMv2_2040_15_52 55603 56397 + 3.A.15.2.1
Gene ID: HRGMv2_2040_15_43
Type: CAZyme
Location: 42380 - 44659 (+)
Gene ID: HRGMv2_2040_15_44
Type: TF
Location: 44752 - 46290 (+)
Gene ID: HRGMv2_2040_15_45
Type: TC
Location: 46293 - 48050 (+)
Gene ID: HRGMv2_2040_15_46
Type: pfam
Location: 48166 - 49419 (+)
Gene ID: HRGMv2_2040_15_47
Type: TC
Location: 49456 - 50793 (+)
Gene ID: HRGMv2_2040_15_48
Type: TC
Location: 50790 - 51638 (+)
Gene ID: HRGMv2_2040_15_49
Type: TC
Location: 51643 - 53343 (+)
Gene ID: HRGMv2_2040_15_50
Type: TC
Location: 53417 - 54883 (+)
Gene ID: HRGMv2_2040_15_51
Type: STP
Location: 54887 - 55528 (+)
Gene ID: HRGMv2_2040_15_52
Type: TC
Location: 55603 - 56397 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Lachnospira
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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